CK739907

Overview
NameCK739907
Unique NameCK739907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.434e-32
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   17 SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            ++++ + FA A++DWKET E HVFKAD+PGL          DG +LQISGERS E+E+K+DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQI+G
Sbjct:   42 ANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.708e-32
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            P   ++ E + FA+A++DWKET EAHVFKADLPG+          DG VL+ISG+R+ EKE+KND WHRVER  G+F+R+FRLPENAK+DQVKA MENGVL
Sbjct:   41 PRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.656e-31
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 2
Query:   20 SNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            + +V+ F +A+VDW+ET EAHVFKAD+PGL          DG +LQISGERS E E+K+D WHRVER  GKF+RRFRLPENAK+++VKASMENGVL               S+ I+G
Sbjct:   40 AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.656e-31
Identity = 70/119 (58.82%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S S E S   +A+VDW+ET EAHVFKADLPGL          +  VL+ISGER VEKEDKND WHRVER  G+F RRFRLPEN K+DQVKA+MENGVL               SIQI+G
Sbjct:   35 SLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.163e-31
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 2
Query:    8 LGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +    +E + FA+A++DWKET EAHVFKADLPG+          DG VL +SGER+ EKEDKNDKWHRVER  GKFVRRFRL E+AK+++VKA +ENGVL               +IQI+G
Sbjct:   31 ISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.825e-31
Identity = 68/127 (53.54%), Postives = 84/127 (66.14%), Query Frame = 2
Query:    5 PLGSSS-----NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            PL +SS      E + F +  +DWKET +AHVFKADLPGL          +G+VLQISGER+ EKE+KNDKWHRVER  GKF+RRFRLPENAK+D+VKA+M NGV+               +I I+G
Sbjct:   31 PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.293e-31
Identity = 68/123 (55.28%), Postives = 82/123 (66.67%), Query Frame = 2
Query:   11 GSSSN---EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            G+SS    E + FA+  +DWKET +AHVFKADLPGL          +G+VLQISGER+ EKE+KN+KWHRVE   GKF+RRFRLPENA +D+VKA MENGVL               SI I+G
Sbjct:   37 GTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.327e-30
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 2
Query:   20 SNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            + E +   +A++DWKET EAHV KADLPG+          DGRVLQISGER  E+E+K+D WHRVER  GKF+RRFRLPENAK+D+VKA MENGVL
Sbjct:   36 ARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.087e-30
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            S S E S   +A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D WHRVER  G+F R+F+LPEN K+DQVKASMENGVL
Sbjct:   37 SLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.644e-29
Identity = 63/96 (65.62%), Postives = 71/96 (73.96%), Query Frame = 2
Query:   20 SNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            S+  S  A+A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D WHRVER  G F R+FRLPEN K+DQVKASMENGVL
Sbjct:   37 SSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
The following BLAST results are available for this feature:
BLAST of CK739907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HS177_ORYSJ7.434e-3255.9317.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_CHERU9.708e-3262.3818.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP17_ARATH1.656e-3155.5617.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH1.656e-3158.8217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16B_WHEAT2.163e-3154.5516.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_DAUCA2.825e-3153.5417.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_DAUCA6.293e-3155.2818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_HELAN5.327e-3063.5417.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS178_ARATH9.087e-3064.2917.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH2.644e-2965.6317.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6299 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739907 ID=CK739907; Name=CK739907; organism=Citrus sinensis; type=EST; length=458bp
GGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTC
AAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTT
CCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGT
CCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACA
AATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGG
TTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGG
TGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCA
AATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTA
ATTAGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTG
TTAAGTGT
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