CK739907

Overview
NameCK739907
Unique NameCK739907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23
Identity = 54/102 (52.94%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    5 PLGSSSNEVSTFAS-AQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            P G   +E S   S A+VDWKET E HV   D+PGL          + RVL++SGER  E+E K D WHRVER  GKF R+FRLP+N  +D VKA +ENGVL
Sbjct:   52 PFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    5 PLGSSSNEVS-TFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            P G   +E S T + A+VDWKET E HV   D+PGL          + RVL++SGER  E++ K D WHRVER  GKF R+F+LP+N  +D VKA MENGVL
Sbjct:   60 PYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.554e-21
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKE--DKND-KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            S +       + +VDWKET  AHVF ADLPG+          DG VL ISGER+ E++   KND +WH VER  GKF RRFRLP  A++DQV ASM+NGVL
Sbjct:   29 SLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.650e-21
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            PLG   +     + A+VDWKET E H    D+PGL          +  VL++SGER  E+E K D+WHRVER  GKF R+F+LP+N  ++ VKA +ENGVL
Sbjct:   57 PLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  149 VLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +LQISGER+VEKEDKND WHRVER  GKF+R FRLP+NAK+DQVKASMENGVL               +I+I+G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGER----SVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            P G   ++V+  + A+VDW+ET +AH    D+PG+          D RVL+ISGER    + E++   D WHR ER  G+F R+ RLP+NA +D + AS++NGVL
Sbjct:   62 PFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.425e-19
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   41 ASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            ++A +DWKET  AHVF AD+PG+          + +VL+ISG+R+   E+K ++WHRVER   +FVR  RLP NA  D V A+++NGVL
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.754e-16
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   20 SNEVSTFASAQVDWKETREAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            +++ S FA+  ++ +ET EA+VF+ADLP G+          +G VL I+GERSV +E+K  + H +ER    F  RF LP++A +D V+ASM+ G+L
Sbjct:   32 ASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.841e-15
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   41 ASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVER-----GRGKFVRRFRLPENAKIDQVKASMENGVL 307
            ++A +DW E+  +H+FK ++PG           +G VL I GE   E++ +N  WH  ER     G  +F+RR  LPEN K+DQVKA +ENGVL
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDG-RVLQISGER-----SVEKEDKND--KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            +++ E +  A A+ DWKET EAHV   D+PG+          +  RVL++SGER     + E+E + D  +WHR ER  G+F RRFR+P  A + +V A +++GVL
Sbjct:   61 AAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
The following BLAST results are available for this feature:
BLAST of CK739907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HSP41_SOYBN2.831e-2352.9422.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA2.831e-2351.9622.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS166_ORYSJ1.554e-2153.4716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH2.650e-2147.5222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN3.827e-2063.51Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ7.217e-1942.8623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ9.425e-1948.3118.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ9.754e-1642.2717.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS157_ARATH4.841e-1542.5515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS219_ORYSJ1.408e-1440.5721.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6299 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739907 ID=CK739907; Name=CK739907; organism=Citrus sinensis; type=EST; length=458bp
GGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTC
AAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTT
CCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGT
CCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACA
AATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGG
TTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGG
TGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCA
AATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTA
ATTAGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTG
TTAAGTGT
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