CK739907

Overview
NameCK739907
Unique NameCK739907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 2 
Query:   26 EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            +    A    D KE   A+ F  D+PGL          D RVL ISGER  E E ++ K+ R+ER  GKF+R+F LP+NA +D++ A   +GVL
Sbjct:   46 DARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVL 138
[Close]
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:   26 EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVE-KEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            +    A+   D  E   A+ F  D+PG+          +  VL +SGER  E KE++  K+ R+ER  GKF+R+F+LPENA +D++ A   +GVL
Sbjct:   38 DAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132
The following BLAST results are available for this feature:
BLAST of CK739907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HSP21_MAIZE7.233e-1141.4917.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS176_ARATH7.233e-1137.8917.6 kDa class II heat shock protein OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6299 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739907 ID=CK739907; Name=CK739907; organism=Citrus sinensis; type=EST; length=458bp
GGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTC
AAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTT
CCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGT
CCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACA
AATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGG
TTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGG
TGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCA
AATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTA
ATTAGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTG
TTAAGTGT
back to top