CK739919

Overview
NameCK739919
Unique NameCK739919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.543e-55
Identity = 96/146 (65.75%), Postives = 116/146 (79.45%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWWA 436
            L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K V   WTETDFRT E PWWA
Sbjct:   35 LYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.015e-55
Identity = 93/145 (64.14%), Postives = 112/145 (77.24%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN       WT+TDFRTGE PWWA
Sbjct:   34 LYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.437e-55
Identity = 93/145 (64.14%), Postives = 113/145 (77.93%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN       WTETDFRTG+ PWWA
Sbjct:   34 LYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.437e-55
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 2
Query:    8 PYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWW 433
            P+ +F  PP  G  AG G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G   F PWTETDFRT  APWW
Sbjct:   95 PFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.488e-55
Identity = 92/144 (63.89%), Postives = 111/144 (77.08%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA +++   V  PWTETDFRTGE PWW
Sbjct:   35 LYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 94/145 (64.83%), Postives = 110/145 (75.86%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P   +F PP    AGGGTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN       WTETDFRTG+ PWWA
Sbjct:   34 LYPVVNYFIPPRAAGAGGGTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 93/144 (64.58%), Postives = 108/144 (75.00%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN  G+VVRGPAPLSLALA+  +EN       WTETDFRTGE PWW
Sbjct:   34 LYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 93/144 (64.58%), Postives = 108/144 (75.00%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN  G+VVRGPAPLSLALA+  +EN       WTETDFRTGE PWW
Sbjct:   34 LYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 92/145 (63.45%), Postives = 109/145 (75.17%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+EN       W+ETDFRT E PWWA
Sbjct:   34 LYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.228e-54
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++N       WTETDFRTGE PWW+
Sbjct:   34 LYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178          
The following BLAST results are available for this feature:
BLAST of CK739919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIB_SYNY31.543e-5565.75Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNPW2.015e-5564.14Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNSC3.437e-5564.14Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_CYAPA3.437e-5565.97Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRI_MASLA4.488e-5563.89Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRI_SYNPX5.862e-5564.83Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM5.862e-5564.58Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM35.862e-5564.58Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNR39.999e-5563.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS32.228e-5462.76Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739919 ID=CK739919; Name=CK739919; organism=Citrus sinensis; type=EST; length=627bp
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
CTACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACATTGAAAATGGTAAGGGAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGT
ACTGCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTAC
AACATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGAATCTTGGCAAT
CTTGACAATTTTCTCTTATCCATTCAT
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