CK739919

Overview
NameCK739919
Unique NameCK739919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.909e-54
Identity = 96/143 (67.13%), Postives = 110/143 (76.92%), Query Frame = 2
Query:   11 YATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWWA 436
            Y  FF PP  G   GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G   F  W+ETDFRTG  PWWA
Sbjct:   64 YGAFFVPPSSGGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.963e-54
Identity = 93/145 (64.14%), Postives = 113/145 (77.93%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWW 433
            L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+  G+VVRGPAPLSLAL  A + E+ K VF PWTE DFRTG+ PWW
Sbjct:   35 LYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.963e-54
Identity = 92/145 (63.45%), Postives = 111/145 (76.55%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F PP    +GGGTTAKD +GN + A  WL+TH  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++E+       W+ETDFRTG+ PWWA
Sbjct:   34 LYPVARYFIPPKAAGSGGGTTAKDELGNVVTATGWLSTHPEGDRSLVQGLKGDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.963e-54
Identity = 93/145 (64.14%), Postives = 113/145 (77.93%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWW 433
            L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+  G+VVRGPAPLSLAL  A + E+ K VF PWTE DFRTG+ PWW
Sbjct:   35 LYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.963e-54
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY+  G+VVRGPAPLSLA+AH +IE+ + +   WTETDFRTG  PWW
Sbjct:   34 LYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.963e-54
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY+  G+VVRGPAPLSLA+AH +IE+ + +   WTETDFRTG  PWW
Sbjct:   34 LYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.465e-54
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            L P A +F P   G  GGGT+AKD +GN I A+ WL+ H  GDR+L +GLKGDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH ++E+ K     W ETDFRTGE PWW
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.201e-53
Identity = 90/145 (62.07%), Postives = 109/145 (75.17%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A FF P   G   GGTTAKD +GN + A  WL+ H  GDR+L +GLKGDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H +I++   +   WTETDFRTG+ PWWA
Sbjct:   34 LYPVANFFMPLRAGGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.201e-53
Identity = 95/144 (65.97%), Postives = 109/144 (75.69%), Query Frame = 2
Query:    8 PYATFFAPPGLGS-AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWW 433
            P+ +F  PP  G  AG G  AKDA GNDI    WL T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G   F PWTETDFRT  APWW
Sbjct:   97 PFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.765e-51
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
The following BLAST results are available for this feature:
BLAST of CK739919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_VOLCA2.909e-5467.13Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_THEEB4.963e-5464.14Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNS94.963e-5463.45Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNEL4.963e-5464.14Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT4.963e-5463.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM14.963e-5463.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM48.465e-5463.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMA4.201e-5362.07Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIB_CYAPA4.201e-5365.97Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_PROMS1.765e-5161.38Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739919 ID=CK739919; Name=CK739919; organism=Citrus sinensis; type=EST; length=627bp
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
CTACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACATTGAAAATGGTAAGGGAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGT
ACTGCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTAC
AACATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGAATCTTGGCAAT
CTTGACAATTTTCTCTTATCCATTCAT
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