CK739919

Overview
NameCK739919
Unique NameCK739919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.305e-51
Identity = 88/145 (60.69%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.305e-51
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.011e-51
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.144e-50
Identity = 85/145 (58.62%), Postives = 107/145 (73.79%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.494e-50
Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++   +   W+ETDFRT E PWWA
Sbjct:   34 LYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.069e-48
Identity = 86/143 (60.14%), Postives = 99/143 (69.23%), Query Frame = 2
Query:   11 YATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK +  PWTETDFRTGE PWWA
Sbjct:  110 YLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFR 412
            L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++     F PW   DFR
Sbjct:   35 LYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 73/137 (53.28%), Postives = 89/137 (64.96%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFR 412
            L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A ++     F PW   DFR
Sbjct:   35 LYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.960e-36
Identity = 72/139 (51.80%), Postives = 87/139 (62.59%), Query Frame = 2
Query:   20 FFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + +    PWT+ D RTGE PWW
Sbjct:   40 FFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.368e-34
Identity = 71/152 (46.71%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFR-----TGEAPWW 433
            L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A + + K +  PWTE DFR       + P+W
Sbjct:   33 LYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
The following BLAST results are available for this feature:
BLAST of CK739919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM92.305e-5160.69Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM22.305e-5161.38Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM03.011e-5161.38Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP1.144e-5058.62Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM51.494e-5058.62Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA4.069e-4860.14Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJA4.509e-3954.01Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJB2.923e-3853.28Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY37.960e-3651.80Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRI_GLOVI4.368e-3446.71Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739919 ID=CK739919; Name=CK739919; organism=Citrus sinensis; type=EST; length=627bp
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
CTACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACATTGAAAATGGTAAGGGAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGT
ACTGCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTAC
AACATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGAATCTTGGCAAT
CTTGACAATTTTCTCTTATCCATTCAT
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