CK739921

Overview
NameCK739921
Unique NameCK739921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDD QMG GFVLTC AYPTSD TI+TH+EE L
Sbjct:   86 VDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.958e-12
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+ +G+VLTC AYPTSD+ IETHKEE+L
Sbjct:   59 VDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   59 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+ SFLDD+Q+GEG+VLTC AYP SD TIETHKEEEL
Sbjct:   56 VDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQSEQSFLDDDQ+  G+VLTC AYP SDVTIET+KEEEL
Sbjct:   57 VDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   59 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct:   59 VDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 123
            VDQ +QSFLDDDQ+  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   56 VDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.818e-12
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            +DQS+QSFLDDDQM  G+VLTC AYP SD+ IETHKEEEL
Sbjct:  102 IDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.818e-12
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDD QM  GFVLTC AYPTSD TI THKEE+L
Sbjct:   56 VDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
The following BLAST results are available for this feature:
BLAST of CK739921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FER_CHLRE3.958e-1280.00Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_NOSMU3.958e-1277.50Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER_NOSMU5.169e-1277.50Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER_COLES5.169e-1280.00Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_SYNP25.169e-1282.50Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_ANASP5.169e-1277.50Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO5.169e-1277.50Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER1_PHYES6.751e-1275.61Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_WHEAT8.818e-1277.50Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SCEQU8.818e-1280.00Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739921 ID=CK739921; Name=CK739921; organism=Citrus sinensis; type=EST; length=306bp
GTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGAAGG
TTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGA
CTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCA
TTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCT
TTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTCTTTA
TTTCTTGGTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCATCGT
ACCTAG
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