CK739925

Overview
NameCK739925
Unique NameCK739925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_MICAN (50S ribosomal protein L31 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  136 KDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 324
            K IHP +Y +AKV CNGELVMT G T+ E  V+VWSGNH FY G +  +  +  +V++F +K+
Sbjct:    3 KKIHPTWYPEAKVICNGELVMTVGSTKPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKY 64
The following BLAST results are available for this feature:
BLAST of CK739925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_MICAN4.669e-1250.7950S ribosomal protein L31 OS=Microcystis aeruginos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739925 ID=CK739925; Name=CK739925; organism=Citrus sinensis; type=EST; length=489bp
CGGAAAATGGCGCAGACTTTGCCCAACACATTCTTCCAAATCAAACCCTC
TGCTCCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCA
GTGGTTACAGGACCCGGGTGGTGACGTGTCGAAAGAAGGACATACACCCT
CAATTCTACGAGGATGCAAAGGTGTACTGTAACGGTGAGCTCGTAATGAC
GACGGGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACC
ATGCGTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAA
GTCGAGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAAT
TCCCGTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGG
CCTCTAAAGGTGGCAAGAAGAAGTAGAAATTTGGTACGACGTTGTTTTTG
AGGTAATTGGGGAATGTTTGTGAGTGGATGGATTTTATT
back to top