CK739929

Overview
NameCK739929
Unique NameCK739929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 1
Query:    4 VINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTA-GPDAH----QAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVF 510
            +I +  G Y+E V +   K  +  +G      VIT      + G  T +SA++ +L D FMA  + ++NTA  PD      QA++ R   + +   NC+F G QDT+   +   F+K C ++G  DFIFG+  S++   ++ V    ++        + AH      + SG+ F
Sbjct:   95 IIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYG--TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIR-------VIAAHAGKSAEEKSGYSF 259          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 54/162 (33.33%), Postives = 79/162 (48.77%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVIT-----GSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCE-------------------FLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEIL 414
            FVI IK GVY E  R+   + N++  G+     VI      G+L        T  S+T+ +    F A  LTI+N     A+QA   +SDSD S I++ +                    +G QDTLY    R F+  CRI G VDFIFG+  ++F++C+++
Sbjct:   59 FVILIKNGVYNE--RLTITRNNLLLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQA---KSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLV 215          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 50/174 (28.74%), Postives = 83/174 (47.70%), Query Frame = 1
Query:    4 VINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTA-GPDAH----QAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVF 510
            +I +  G Y E V +   K  +  +G      VIT      + G  T +SA++ +L D FMA  + ++NTA  PD      QA++ R   + +   NC+F G QDT+   +   F+K C ++G  DFIFG+  S++   ++ V    ++        + AH      + SG+ F
Sbjct:   95 IIKMAHGEYREKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYG--TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHVVGDGIR-------VIAAHAGKSAEEKSGYSF 259          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVIT-----GSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCE-------------------FLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEIL 414
            FVI IK GVY E  R+   + N+   G+     VI      G+L        T  S+T+ +    F A  LTI+N     A+QA   +SDSD S I++ +                    +G QDTLY    R F+  CRI G VDFIFG+  ++F++C+++
Sbjct:   59 FVILIKNGVYNE--RLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQA---KSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLV 215          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 50/151 (33.11%), Postives = 71/151 (47.02%), Query Frame = 1
Query:   79 GDGMGKTVITGSLNVGQQGVSTYES-------ATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVF 510
            G+G   T IT + +      ST+ S         + ++      + LT  N    D   AVA     D S   NC+FLG QDT++ +  R  +K C I+G +DFIFG+  S++ DC I      L   K     +TA GR+  +  SGFVF
Sbjct:   42 GEGQRVTTITYNGHAATDVSSTFTSYPSHIVVRNLSIMNTYNRLTSLTKANGMSWDIKPAVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGAL-ASKVSFGYITAQGRSSDSDPSGFVF 191          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 54/164 (32.93%), Postives = 72/164 (43.90%), Query Frame = 1
Query:    7 INIKAGVYEETVRVP------------FEKKNVVFLGDGMGKTVITGSLNVGQQGVS------TYESATVGVLGDGFMASGLTIQN-----TAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHS------LRQFYKKCRIQGNVDFIFGNSPSIFHDCEI 411
            I++KAG Y E V VP                N V + +    T  +G+      G S      T  SAT  V    F A  LT +N     T   +   AVA     D +I+EN   +GNQDTLY  +      +R ++K   IQG+ DFIFG   ++FH C I
Sbjct:  111 ISVKAGTYNELVCVPESAPPITLYSLDANANNTVIVYNNANPTPASGAKTNPCMGTSSNATVGTVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYLGATNNTMVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTI 274          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.948e-12
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 1
Query:    7 INIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTY------ESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFG-NSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            I I+ G Y+E V +P     ++  G     T  T +L      ++        E+AT+    +G     L I NT G   HQA+A  + +       C+F G QDTL A +  Q Y    I+G VDFIFG ++ + FH+C+I V       E   + ++TA+GR+  +  S +V
Sbjct:   57 IFIEEGSYDEQVYIPALSGKLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVL------EGPSSASITANGRSSESDDSYYV 224          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 52/164 (31.71%), Postives = 72/164 (43.90%), Query Frame = 1
Query:    7 INIKAGVYEETVRVPFEKKNVVFLG------------DGMGKTVITGSLNVGQQGVS------TYESATVGVLGDGFMASGLTIQN-----TAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHS------LRQFYKKCRIQGNVDFIFGNSPSIFHDCEI 411
            I++KAG+Y E V VP     +   G            +    T  +G+      G S      T  SAT  V    F A  LT +N     T   +   AVA     D +I+EN   +GNQDTL+  +      +R ++K   IQG+ DFIFG   ++FH C I
Sbjct:  111 ISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVGTLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTI 274          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 1
Query:    7 INIKAGVYEETVRVPFEKKNVVFLGDGMGK-------TVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFG-NSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            I I+ G Y+E V +P     V+  G              IT +++    G S   +AT      G     L I NT G   HQA+A  + +D      C F G QDTL A +  Q Y    I+G VDFIFG ++ + F + +I V       E   + ++TA+GR+     S +V
Sbjct:   57 IFIEEGTYDEQVYLPAMTGKVIIYGQTENTDSYADNLVTITHAISYEDAGESDDLTATFRNKAVGSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVV------EGPTSASITANGRSSETDTSYYV 225          
The following BLAST results are available for this feature:
BLAST of CK739929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PPME1_ARATH4.219e-1428.74Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PMEA_ERWCH7.196e-1433.33Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PME48_ARATH7.196e-1428.74Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PMEA_DICD32.094e-1333.33Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME52_ARATH2.094e-1333.11Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME2_RALSO1.357e-1232.93Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME_ASPTU3.948e-1231.03Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME1_RALSO5.157e-1231.71Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME_ASPAC7.446e-1130.86Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6751 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739929 ID=CK739929; Name=CK739929; organism=Citrus sinensis; type=EST; length=512bp
TTTGTGATTAACATAAAGGCCGGTGTTTATGAGGAGACCGTTAGGGTTCC
ATTCGAGAAAAAGAACGTGGTGTTTTTAGGCGACGGCATGGGCAAAACGG
TCATTACAGGTTCTTTAAACGTGGGACAGCAAGGGGTTAGCACTTACGAA
TCTGCTACCGTCGGAGTTCTTGGTGATGGGTTCATGGCCAGTGGTCTCAC
AATTCAGAACACGGCAGGTCCTGATGCCCACCAAGCAGTGGCCTTTAGAT
CAGACAGTGATCTCTCCATTATTGAGAACTGTGAATTCTTGGGCAATCAA
GACACTCTATATGCTCATTCCCTTCGGCAATTCTACAAAAAGTGCCGCAT
TCAGGGCAATGTGGACTTCATTTTCGGAAACTCACCGTCAATCTTCCATG
ATTGCGAGATCTTGGTTGCTCCGCGGCAATTAAAGCCGGAGAAAGGTGAG
AACAATGCAGTGACTGCTCATGGCAGAACGGACCCTGCTCAATGGTCAGG
TTTCGTTTTCCA
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