CK739937

Overview
NameCK739937
Unique NameCK739937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:970..1531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.664e-23
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   82 AITCGQVSGSLAPCIGFLRSGGPIPMPCC-NGVRSLNAAARTTPDRQTACNC-LKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            AI+CGQVS ++ PC+ + R  G  P   C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A+ +PG CGV +PY IS S DCS+V
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.163e-23
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   25 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            K+++ L++  +     +   I CG V+ +LA C+ +L + GP+P  CC GV+SL   A+TTPDR+  C CLK A + I  LN +  A LP  CGVSIPY IS ST+C  +
Sbjct:    6 KIITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.375e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   13 MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            MA + LV+  V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.375e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   13 MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            MA + LV+  V+   V    ++ A++CG V+ S+APC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.375e-22
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   16 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            A + L++  ++ ML   P +A AI CG V   + PC+ +++ GGP P   CC+GV++L+  AR+  DRQ+ACNCLK  AR I +LN +NA  +P  CGV++PY IS + DCS+V
Sbjct:    1 AQVMLMAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   13 MAALKLVSALVLCMLVT-GPLSAQA-ITCGQVSGSLAPCIGFLRSGG---PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPY--KISTSTDCS 348
            MA L  +  LV   ++  GP++A+A ++CG+V+ +L PC G+L +GG   P P  CCNGVR LN    TT DR+ AC C+K AAR++ P LN + AAG+P  CG+ IPY  +I  +T C+
Sbjct:    1 MAGLMKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQ-CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.850e-21
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    7 SQMAALKL-VSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            ++ AA KL + ALV  ML+    +  AITCGQVS +L PC  + +  G  P   CC+GV+ L   AR+T D+Q  C CLK  A +    N   AAG+P  CGVS+PY IS S DCSK+
Sbjct:    2 ARTAATKLALVALVAAMLLVA--ADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   40 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA--ARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 357
            L +C+++       A++C  V   L PC+ ++  GGP+P  CCNG+ +L + A+T+ DRQ  C C+K A    ++    + NA  LP  CGV +PYK S STDC  ++
Sbjct:    6 LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.210e-19
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   40 LVLCMLVTGPL---SAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAR--SIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 357
            L LC+L+       S  AI+C  V  +L PC+ ++  GG IP  CCNG+R L+  A +  D+Q  C C+K      S  S+ L  AA LPG CGV +PYKI  ST+C+ ++
Sbjct:    6 LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK739937 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   40 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGG-PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 354
            LV+ +L+      +AI C QV+  LA C+ +L++GG P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   14 LVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of CK739937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_ELECO3.664e-2355.91Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTPC_ARATH8.163e-2343.64Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ2.375e-2244.35Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.375e-2244.35Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT2.375e-2245.61Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP7_ARATH3.429e-2145.83Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP8_HORVU5.850e-2146.61Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP6_ARATH1.882e-1937.96Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_ARATH3.210e-1941.44Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTPB_ARATH9.339e-1946.23Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739937 ID=CK739937; Name=CK739937; organism=Citrus sinensis; type=EST; length=561bp
GAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTG
CATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGG
TGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCCT
ATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAG
AACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCA
GATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAGGAGCT
TGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGCTCTAA
GGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGTTGACG
GAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATTTATGA
GTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGGTCCAT
GTTATGTTTTATTGGCTTTGCTTTCATGTCATCGGCAGTTTGGGTCTATT
CTGGTTATTAA
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