CK739941

Overview
NameCK739941
Unique NameCK739941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3951 contig Csv1_Contig3951:339..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   10 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 435
            L   F   G +   +++R+ +TG   GY F++F S   ++R ++  NG  + N  +  ++++A  G GE   DT    ++V +L   +TD  L +T   +Y S     ++ D+LTGR +G  FVR+    E   A++ +N V
Sbjct:  141 LYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN--KRLKVSYARPG-GESIKDT---NLYVTNLPRTITDDQL-DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 275          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 49/170 (28.82%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   22 FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-------------TPMPNGEQNF----RLNWAS----FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQ 468
            F   G V  V+VI +K TG+  G+GF+   S +  E   Q FNG              P P  E  F    R ++ S    +G G        + ++VG+L+  V D  L+  F  +    + A+V+ DR +GR+KG+GFV +    E   A+  ++G     R +R+ +
Sbjct:  111 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQLLIRKLFQGQQQYPKASYQNSQVAQSDDD 555
            E  L   F+  G+V +++V R+  T +  GY ++ + + A  ER L+  N T +    +  R+ W+      ++  T    +F+ +L + + +  L +TF A + +    KV  D   G +KGYGFV +        A+  +NG+  + + + +G  + +K  Q + +  KA++ N  +   D D
Sbjct:   62 EAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDSAIDNKALHDTFAA-FGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQD 240          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQLLIRKLFQGQQQYPKASYQNSQVAQSDDD 555
            E  L   F+  G+V +++V R+  T +  GY ++ + + A  ER L+  N T +    +  R+ W+      ++  T    +F+ +L A + +  L +TF A + +    KV  D   G +KGYGFV +        A+  +NG+  + + + +G  + +K  Q + +  KA++ N  +   D +
Sbjct:   65 EAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQE 243          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQLLIRKLFQGQQQYPKASYQNSQVAQSDDD 555
            E  L   F+  G+V +++V R+  T +  GY ++ + + A  ER L+  N T +    +  R+ W+      ++  T    +F+ +L A + +  L +TF A + +    KV  D   G +KGYGFV +        A+  +NG+  + + + +G  + +K  Q + +  KA++ N  +   D +
Sbjct:   61 EAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQE 239          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/185 (24.86%), Postives = 89/185 (48.11%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQLLIRKLFQGQQQYPKASYQNSQVAQSDDD 555
            E  L   F+  G+V +++V R+  T +  GY ++ + + A  ER L+  N T +    +  R+ W+      ++  T    +F+ +L A + +  L +TF A + +    KV  D   G +KGYGFV +        A+  +NG+  + + + +G  + +K  Q + +  KA++ N  +   D +
Sbjct:   65 EAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALRK--TGQGNVFIKNLDAAIDNKALHDTFAA-FGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQE 243          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 38/141 (26.95%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   10 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 432
            L + F+  GEV + K+IR+K  G   GYGF+ +++   AER + T NG  + +  +  ++++A        +   D  +++  L   +T   +++ F   +     ++V++D+ TG ++G  F+RF   SE   A+   NG
Sbjct:   36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQS--KTIKVSFAR----PSSETIKDANLYISGLPRTMTQKDVEDMF-LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 46/197 (23.35%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   22 FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG------------VFCSTRPMRIGQLLIRKLFQGQ-QQYPKASYQNSQVAQSDDDPNNTTG 573
            F   G++ + K++R+K TGQ  GYGF+ +     A++ + T NG  +    +  ++++A   +   R    D  ++V  L   ++   +++ F ++Y     +++++D++TG ++G GF+RF    E   A+  +NG             F +    + GQ L+  L+Q   ++Y    +  +Q  + D+  N   G
Sbjct:   59 FGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQT--KTIKVSYARPSSASIR----DANLYVSGLPKTMSQKEMEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYG 248          
The following BLAST results are available for this feature:
BLAST of CK739941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
SXL_DROME5.678e-1129.58Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
ROC1_ARATH5.678e-1128.82Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP_ASPOR5.678e-1124.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI7.416e-1124.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN7.416e-1124.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU7.416e-1124.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELV1B_XENLA7.416e-1126.95ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV3_HUMAN7.416e-1123.35ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739941 ID=CK739941; Name=CK739941; organism=Citrus sinensis; type=EST; length=574bp
GAGACCTATCTCAACACTTGTTTTGCACACACCGGCGAGGTTGTCGCTGT
AAAAGTAATTCGTAATAAGCAAACTGGTCAAATAGAAGGTTATGGATTTA
TTGAGTTTATTTCGCGTGCTGGTGCTGAAAGAGTTTTGCAGACATTTAAC
GGTACCCCTATGCCAAACGGTGAGCAGAACTTCAGGCTAAACTGGGCATC
TTTTGGTGCTGGCGAGAAGCGCGATGACACCCCTGACCACACAATATTTG
TTGGAGATTTGGCTGCTGACGTTACTGATTACATGCTTCAAGAGACCTTC
AGGGCCCGCTATCCCTCTACTAAAGGTGCAAAGGTTGTCATTGATAGGCT
TACTGGACGCACAAAGGGTTATGGATTTGTGAGATTTGGTGATGAAAGTG
AACAGCTACGTGCCATGACTGAGATGAATGGTGTCTTTTGTTCTACGAGA
CCAATGCGGATTGGCCAGCTACTAATAAGAAAACTGTTTCAAGGTCAGCA
GCAGTACCCTAAAGCTTCATATCAGAATTCTCAAGTGGCACAGAGTGATG
ACGATCCAAATAATACAACGGGGT
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