CK739944

Overview
NameCK739944
Unique NameCK739944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:380..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:   98 LSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:   98 LSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+CT KTEWLDGKHVVFG+VVEG+DVVKA+E  GS SG+  K  +IADCGQL
Sbjct:  105 LSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 3.406e-24
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+CTAKTEWLDGKHVVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:   98 LSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.810e-24
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:  113 LSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.918e-23
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            L MANAGP TNGSQFF+ TAKT WLD +HVVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:   98 LWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.389e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAG  TNGSQFF+CTA T WLDGKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:   98 LSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.096e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  249 LSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.096e-22
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:  105 LSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.869e-22
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  206 LSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
The following BLAST results are available for this feature:
BLAST of CK739944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
PPIA_RAT1.171e-2473.13Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_AOTTR1.171e-2473.13Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYP3_CAEEL1.171e-2477.61Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIA_RABIT3.406e-2473.13Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_DICDI5.810e-2476.12Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIA_BLAGE4.918e-2370.15Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIA_HEMPU8.389e-2368.66Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIE_RHIOR1.096e-2271.64Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
CYP2_CAEEL1.096e-2271.64Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIE_SCHMA1.869e-2267.16Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6766 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739944 ID=CK739944; Name=CK739944; organism=Citrus sinensis; type=EST; length=221bp
CTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGT
CTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTC
AGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCC
AGCTCCGGCAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATT
GTCTTAGATTTGATCATGATA
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