CK739944

Overview
NameCK739944
Unique NameCK739944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:380..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.749e-20
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 198
            LSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   98 LSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.285e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+   KT WLDGKHVVFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:   96 LSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.285e-20
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 195
            LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   96 LSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.089e-20
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   96 LSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.647e-20
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+ T K  WLDGKHVVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   98 LSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.681e-20
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 198
            LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  234 LSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.134e-19
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 198
            LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  234 LSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.481e-19
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 198
            LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  234 LSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.299e-19
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:  116 LSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.627e-19
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  233 LSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
The following BLAST results are available for this feature:
BLAST of CK739944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
PAL4B_HUMAN1.749e-2065.15Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPH_UROFA2.285e-2069.12Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
CYPH_SCHPO2.285e-2069.23Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIA_CANAL5.089e-2065.67Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIA1_RHIOR6.647e-2065.67Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIE_HUMAN8.681e-2063.64Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_PONAB1.134e-1963.64Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE1.481e-1963.64Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
CYPC_YEAST3.299e-1962.69Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIE_DROME5.627e-1959.70Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6766 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739944 ID=CK739944; Name=CK739944; organism=Citrus sinensis; type=EST; length=221bp
CTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGT
CTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTC
AGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCC
AGCTCCGGCAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATT
GTCTTAGATTTGATCATGATA
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