CK739962

Overview
NameCK739962
Unique NameCK739962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.037e-86
Identity = 156/206 (75.73%), Postives = 169/206 (82.04%), Query Frame = 1
Query:    1 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F
Sbjct:   59 LGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKF 264          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 8.886e-85
Identity = 149/205 (72.68%), Postives = 172/205 (83.90%), Query Frame = 1
Query:    1 LGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F
Sbjct:   45 LGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKF 249          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.516e-84
Identity = 155/206 (75.24%), Postives = 166/206 (80.58%), Query Frame = 1
Query:    1 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT F
Sbjct:   56 LGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKF 261          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.853e-82
Identity = 152/205 (74.15%), Postives = 167/205 (81.46%), Query Frame = 1
Query:    1 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F
Sbjct:   48 LGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKF 252          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 6.820e-77
Identity = 147/204 (72.06%), Postives = 161/204 (78.92%), Query Frame = 1
Query:    1 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNF
Sbjct:   62 LGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNF 264          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.286e-75
Identity = 143/208 (68.75%), Postives = 163/208 (78.37%), Query Frame = 1
Query:    1 LGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F
Sbjct:   42 LGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKF 249          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.574e-73
Identity = 137/200 (68.50%), Postives = 159/200 (79.50%), Query Frame = 1
Query:   19 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F
Sbjct:   71 QHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKF 270          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.523e-68
Identity = 122/149 (81.88%), Postives = 129/149 (86.58%), Query Frame = 1
Query:    1 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 447
            LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+                AFDPLGLA+DP+ F
Sbjct:   57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.585e-65
Identity = 120/146 (82.19%), Postives = 126/146 (86.30%), Query Frame = 1
Query:  175 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNF 612
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNF
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNF 146          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.811e-45
Identity = 100/191 (52.36%), Postives = 121/191 (63.35%), Query Frame = 1
Query:   19 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 588
            + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:   80 EIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
The following BLAST results are available for this feature:
BLAST of CK739962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_HORVU8.037e-8675.73Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLRE8.886e-8572.68Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.516e-8475.24Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO1.853e-8274.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO6.820e-7772.06Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE1.286e-7568.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA4.574e-7368.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR1.523e-6881.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY4.585e-6582.19Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.811e-4552.36Chlorophyll a-b binding protein CP26, chloroplasti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6784 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739962 ID=CK739962; Name=CK739962; organism=Citrus sinensis; type=EST; length=614bp
TTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCC
TGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAGACAT
TTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTT
GGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAA
GTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAG
GTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATT
TTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAAGGATA
CAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTG
GTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCT
GAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCAT
GTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGA
ACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTAT
GCCACTAACTTTGT
back to top