CK739962

Overview
NameCK739962
Unique NameCK739962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.225e-27
Identity = 73/191 (38.22%), Postives = 98/191 (51.31%), Query Frame = 1
Query:   25 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 576
            P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:   75 PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.905e-27
Identity = 71/191 (37.17%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   25 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 576
            P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:   75 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.082e-25
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  280 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 588
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHN 110          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 72/189 (38.10%), Postives = 92/189 (48.68%), Query Frame = 1
Query:   22 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAN 585
            +P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+ +K G+      W+ AG  Q F+     ++    L H   I   W   +   G V    I                 F+PL  A  P Q  E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 75/230 (32.61%), Postives = 101/230 (43.91%), Query Frame = 1
Query:   19 QTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 579
            ++P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:   60 KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 1
Query:   19 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 588
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +                    L +    + +    E +R                  FDPL L  D  + A     E+KNGRLA+ ++ G   Q + TG+ P+ NL  H+A+P+  N
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 74/229 (32.31%), Postives = 102/229 (44.54%), Query Frame = 1
Query:   22 TPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 579
            +P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  GV      W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:   64 SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  112 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 555
            RE E+IH RWAMLG LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP++   LK+ E+K+ RLAM +   F +QA  TGKGP+  L
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR---NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 62/204 (30.39%), Postives = 80/204 (39.22%), Query Frame = 1
Query:   25 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 546
            P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG+VE  R                                       FDPL LA          D ++   LKV E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK739962 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 61/204 (29.90%), Postives = 81/204 (39.71%), Query Frame = 1
Query:   25 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 546
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG          G  +    WF+AGA            +P  +   S   +   Q++LMG+VE  R                                       FDPL LA          D D+   LK+ E+K+ RLAM +M  F+ +A   GK P+
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
The following BLAST results are available for this feature:
BLAST of CK739962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB12_PETHY2.225e-2738.22Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.905e-2737.17Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_EUGGR2.082e-2558.49Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_ARATH2.155e-2238.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4B_ARATH4.493e-2032.61Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
LH18_EUGGR1.001e-1931.58Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4A_ARATH1.001e-1932.31Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH2.551e-1537.84Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_SOLLC2.388e-1330.39Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL5.320e-1329.90Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6784 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739962 ID=CK739962; Name=CK739962; organism=Citrus sinensis; type=EST; length=614bp
TTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCC
TGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAGACAT
TTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTT
GGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAA
GTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAG
GTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATT
TTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAAGGATA
CAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTG
GTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCT
GAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCAT
GTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGA
ACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTAT
GCCACTAACTTTGT
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