CK739964

Overview
NameCK739964
Unique NameCK739964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length204
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:1081..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 193
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.475e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGG 193
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.475e-30
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.513e-30
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG
Sbjct:  143 WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGG 205
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.513e-30
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG
Sbjct:  143 WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGG 205
The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2A_SPIOL1.895e-3093.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE1.895e-3093.65Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC1.895e-3093.65Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP1.895e-3093.65Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC1.895e-3093.65Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.895e-3093.65Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_PETSP2.475e-3093.65Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_TOBAC2.475e-3092.06Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_PYRPY5.513e-3090.48Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY5.513e-3090.48Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6786 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bp
AGAAGAGAGAACTAGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGC
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