CK739964

Overview
NameCK739964
Unique NameCK739964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length204
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.201e-30
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGG
Sbjct:  131 WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGG 193          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.201e-30
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  131 WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGG 193          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.405e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:  128 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGG 190          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.405e-30
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:  121 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGG 183          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.228e-29
Identity = 56/63 (88.89%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGG
Sbjct:  130 WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGG
Sbjct:  131 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGG 193          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  126 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 188          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.736e-29
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  133 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 195          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.736e-29
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  134 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 196          
The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_WHEAT7.201e-3090.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PETSP7.201e-3092.06Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_SOYBN9.405e-3093.65Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_SOYBN9.405e-3093.65Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_POLMU1.228e-2988.89Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_NICPL1.604e-2992.06Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_ORYSJ1.604e-2995.24Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.604e-2995.24Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB28_PEA2.736e-2992.06Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA2.736e-2992.06Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6786 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bp
AGAAGAGAGAACTAGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGC
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