CK739964

Overview
NameCK739964
Unique NameCK739964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length204
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.345e-27
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG
Sbjct:  129 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGG 191          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.452e-27
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.271e-26
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG
Sbjct:  130 WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.830e-26
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGG 193          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.830e-26
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG
Sbjct:  131 WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGG 193          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.308e-26
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.308e-26
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG
Sbjct:  128 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGG 190          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.308e-26
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG
Sbjct:  128 WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGG 190          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.239e-26
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG
Sbjct:  102 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGG 164          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    7 EN*WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            E  WFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AGG LGEV DPLY GG
Sbjct:  126 EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGG 191          
The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_LEMGI3.345e-2785.71Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC7.452e-2784.13Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA1.271e-2685.71Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_SINAL4.830e-2685.94Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PINTH4.830e-2684.13Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP6.308e-2684.13Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ6.308e-2684.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.308e-2684.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC8.239e-2684.13Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB48_MAIZE1.076e-2581.82Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6786 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bp
AGAAGAGAGAACTAGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGC
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