CK739964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25 Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204 WFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE D +YPGG Sbjct: 130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGG 192
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25 Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 204 WFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGG Sbjct: 131 WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGG 194
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25 Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 204 WFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGG Sbjct: 131 WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGG 194
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.998e-23 Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPG 201 WFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A A QV+LMG +EGYR+ GGP GE DPLYPG Sbjct: 118 WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPG 179
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.899e-22 Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPG 201 WFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A A QVVLMG +EGYR+ GGP GE DPLYPG Sbjct: 121 WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPG 182
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21 Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 1 Query: 16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPG 201 WFKAGA IF +GGL+YLGNPSLIHAQ+I+A A QVVLMG VEGYR+ GGP GE DPLYPG Sbjct: 139 WFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPG 200
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.719e-19 Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1 Query: 4 REN*WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGG 204 +E WFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG Sbjct: 125 KEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 191
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.838e-18 Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 4 REN*WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 204 +E WFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G +GE D LYPGG Sbjct: 128 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGG 194
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.841e-18 Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 Query: 55 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 204 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGG Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGG 51
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 76 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194 The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bpback to top |