CK739964

Overview
NameCK739964
Unique NameCK739964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length204
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   76 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   76 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 43
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   76 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.323e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   76 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.991e-17
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGG 204
            WFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG
Sbjct:  116 WFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGG 180
The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2E_SOLLC6.323e-1895.35Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC6.323e-1895.35Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.323e-1895.35Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC6.323e-1895.35Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2_DUNTE6.991e-1767.69Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6786 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bp
AGAAGAGAGAACTAGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGC
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