CK739967

Overview
NameCK739967
Unique NameCK739967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 7.230e-30
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A  KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.230e-30
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.233e-29
Identity = 57/103 (55.34%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFVKA +A  K+SGK++ P W D VK  + KELAP+D DWYY+R AS+AR +Y+R G+GVG+  +IYGG +RNG+RP H+ + S  +AR +LQ L
Sbjct:    5 TVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.121e-29
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKD+  H   KA +  LK++GK+++P   DIVKTA+FKELAPYDPDW+YVR AS+ R +Y R   GVGS  +IYGG KRNG  P HFC+++   AR  LQ L
Sbjct:    5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.994e-29
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W DIVK A+ KELAP D +W+Y+RAAS  R +YLR G+GVGS  +IYGG KRNG  P HF   S  +AR +LQ L
Sbjct:    7 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQAL 109          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 2
Query:   68 TARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TA T+KDV P EF+  Y+  LK++G++++P W DI KTA ++EL P +PDW Y R A++ARK+Y+R G GV ++RR++GG++RNG RP HF   +G   R+ L+QL
Sbjct:    4 TAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQL 109          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19S_ASCSU (40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            M    +VKDV  HE V+  +  LK+SGK+++P W+D+VK    KELAP D DWYYVR AS+AR++Y+R   GVG+ RR+YGG+KR G  P HF ++SG++ R  LQ L
Sbjct:    1 MVKQPSVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTL 108          
The following BLAST results are available for this feature:
BLAST of CK739967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_HUMAN4.239e-3058.2540S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN4.239e-3058.2540S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19B_SCHPO4.239e-3058.2540S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19_PIG7.230e-3058.2540S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19A_SCHPO7.230e-3058.2540S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_MYXGL1.233e-2955.3440S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19A_DROME6.121e-2956.3140S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19_ICTPU7.994e-2958.2540S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_DICDI1.781e-2850.0040S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19S_ASCSU3.038e-2851.8540S ribosomal protein S19S OS=Ascaris suum GN=RPS1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739967 ID=CK739967; Name=CK739967; organism=Citrus sinensis; type=EST; length=386bp
CAATTCCACCACCTTCTTGCAAAAGCGAAGCTTTGAGTCGCTGTCCTGCT
CTGTTGTGACCATGGCTACCGCTAGGACTGTCAAAGATGTGTCTCCTCAT
GAGTTTGTGAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGA
ACTTCCCCCATGGACTGACATAGTCAAGACTGCCCAGTTCAAGGAGCTTG
CTCCCTATGACCCTGACTGGTACTATGTCAGAGCTGCCTCCATGGCAAGG
AAAATCTACTTGAGGCAAGGGCTTGGTGTGGGTTCTTTCAGGAGGATTTA
TGGTGGAAGTAAGAGGAATGGAAGTCGTCCACCTCACTTCTGCAAAAGCA
GTGGTGCTATTGCTCGCCACATTCTTCAACAGTTGC
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