CK739967

Overview
NameCK739967
Unique NameCK739967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.154e-27
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+RAAS  R +YLR G GVGS  +IYGG +RNG  P H+ + S  +AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_EMENI (40S ribosomal protein S19 OS=Emericella nidulans GN=rps19 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.969e-27
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TV+DV   +F+ AY+A LKR GK+ +P W D VKT+   EL P D DWYYVRAA++AR IYLR+ +GVG  R+++G +K  GSRP H   +SGA+ R +LQ L
Sbjct:    5 TVRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19G_ASCSU (40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            M  A +VKDV  HE V+  +  LK+SGK+++P W+D+ K    KELAP + DWYYVR AS+AR++Y+R   GV + R +YGGSKR G  P HF K+SG++ R  LQ L
Sbjct:    1 MVKATSVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_ENTHI (40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.177e-26
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +KDV   +F+KAY+ HLK+SGK+E+P W D VKT   KELAP +PDW Y+RAA++ARK+YL  G+GV + RR YG        P H    SG + R+ILQQL
Sbjct:    7 IKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.843e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+R+AS  R +YLR G GVGS  +IYG  +RNG  P H+   S  +AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_CAEEL (40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.713e-26
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            M  A ++KDV  HE  K+ +  LK+SGK+++P W+D+VK    KELAP DPDW+Y RAAS+AR +Y R   G+G+F+++YGG+KR G  P HF  S+G   R  +QQL
Sbjct:    1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19B_YEAST (40S ribosomal protein S19-B OS=Saccharomyces cerevisiae GN=RPS19B PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPD-WYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +V+DV+  +F+ AY++ L+R GK+E+P + DIVKT+   E+ P D + W+Y RAAS+AR IY+R+ +GVG   ++YGG+K  G RP     +SG+I R +LQ L
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQAL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19B_DROME (40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVK++  H   K  +A LK+SGK+ +P     +KT +FKE AP D DW+Y R AS+ R +YLR   GVG+F ++Y G KRNG RP   C+SS    R  LQ L
Sbjct:    5 TVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19A_YEAST (40S ribosomal protein S19-A OS=Saccharomyces cerevisiae GN=RPS19A PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPD-WYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +V+DV+  +F+ AY++ L+R GK+E+P + DIVKT+   E+ P D + W+Y RAAS+AR IY+R+ +GVG   ++YGG+K  G RP     +SG+I R +LQ L
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQAL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.157e-19
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TV DV     +   +  LK   K++ P W + VKT   KE  P +PDW+YVRAA++ R++Y+   +GV S R  YGG K  GSRP  F + SGAI R  LQQL
Sbjct:    3 TVYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQL 105          
The following BLAST results are available for this feature:
BLAST of CK739967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_GILMI1.154e-2754.3740S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_EMENI1.969e-2753.4040S ribosomal protein S19 OS=Emericella nidulans G... [more]
RS19G_ASCSU1.667e-2650.9340S ribosomal protein S19G OS=Ascaris suum GN=RPS1... [more]
RS19_ENTHI2.177e-2652.9440S ribosomal protein S19 OS=Entamoeba histolytica... [more]
RS19_PAGMA2.843e-2652.4340S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19_CAEEL3.713e-2650.0040S ribosomal protein S19 OS=Caenorhabditis elegan... [more]
RS19B_YEAST7.247e-2246.1540S ribosomal protein S19-B OS=Saccharomyces cerev... [more]
RS19B_DROME7.247e-2247.5740S ribosomal protein S19b OS=Drosophila melanogas... [more]
RS19A_YEAST7.247e-2246.1540S ribosomal protein S19-A OS=Saccharomyces cerev... [more]
RS19E_METTH1.157e-1945.6330S ribosomal protein S19e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739967 ID=CK739967; Name=CK739967; organism=Citrus sinensis; type=EST; length=386bp
CAATTCCACCACCTTCTTGCAAAAGCGAAGCTTTGAGTCGCTGTCCTGCT
CTGTTGTGACCATGGCTACCGCTAGGACTGTCAAAGATGTGTCTCCTCAT
GAGTTTGTGAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGA
ACTTCCCCCATGGACTGACATAGTCAAGACTGCCCAGTTCAAGGAGCTTG
CTCCCTATGACCCTGACTGGTACTATGTCAGAGCTGCCTCCATGGCAAGG
AAAATCTACTTGAGGCAAGGGCTTGGTGTGGGTTCTTTCAGGAGGATTTA
TGGTGGAAGTAAGAGGAATGGAAGTCGTCCACCTCACTTCTGCAAAAGCA
GTGGTGCTATTGCTCGCCACATTCTTCAACAGTTGC
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