CK739967

Overview
NameCK739967
Unique NameCK739967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.042e-16
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPP-WTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TV DV     +K  +  LK    M  PP W   VKT   KE +P   DW+Y+R AS+ R++Y+   +G+   R  YGG KR GS+PP F K SGAI R+ L QL
Sbjct:    3 TVYDVPADLLIKRVAERLK---DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQL 103          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.942e-16
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TV DV   + ++  +  LK    + +P W D VKT   +E  P   DW+Y+R AS+ RKIY+   +GV   R  YGG K  G  P HF K SG I R  LQ+L
Sbjct:    3 TVYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQEL 104          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  155 PPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            P W    KT   KE  P D DW+YVRAAS+ RK+Y   + +G+ +FR IYGG +  GS P HF K+ G++ R ILQQL
Sbjct:   30 PAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.570e-15
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TV DV     V+  +  LK   +++ P W   VKT + KE  P   DW+Y R AS+ R++Y+   +G+   R  YGG K  G  P  F K+ G+I R  LQQL
Sbjct:    3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQL 105          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 39/103 (37.86%), Postives = 50/103 (48.54%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VK V     +   S  LK   K++ P W   VKT   KE  P   DW YVRAASM RK+Y+   LG+      YGG    GS+  H    S +I R +  +L
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHEL 105          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.205e-12
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VK V     +   S  LK   K+  P W+  VKT   +E +P + DW YVRAA+M RK+Y+   LG+      YGG    GS+  H  + S +I R++  +L
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHEL 105          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGS----RPPHFCKSSGAIARHILQQL 385
            T+ DV P E ++A +  L     +E P W +  KT   +EL P   D++  RAAS+ RK+ +   +GV + R  YG SK+  +    RP    K SG I R  LQQL
Sbjct:    3 TLYDVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQL 109          
The following BLAST results are available for this feature:
BLAST of CK739967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19E_ARCFU2.042e-1644.2330S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_METJA5.942e-1641.7530S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_AERPE1.729e-1550.0030S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_PYRHO6.570e-1538.8330S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_THEVO1.049e-1237.8630S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_THEAC5.205e-1235.9230S ribosomal protein S19e OS=Thermoplasma acidoph... [more]
RS19E_HALMA5.755e-1137.3830S ribosomal protein S19e OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739967 ID=CK739967; Name=CK739967; organism=Citrus sinensis; type=EST; length=386bp
CAATTCCACCACCTTCTTGCAAAAGCGAAGCTTTGAGTCGCTGTCCTGCT
CTGTTGTGACCATGGCTACCGCTAGGACTGTCAAAGATGTGTCTCCTCAT
GAGTTTGTGAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGA
ACTTCCCCCATGGACTGACATAGTCAAGACTGCCCAGTTCAAGGAGCTTG
CTCCCTATGACCCTGACTGGTACTATGTCAGAGCTGCCTCCATGGCAAGG
AAAATCTACTTGAGGCAAGGGCTTGGTGTGGGTTCTTTCAGGAGGATTTA
TGGTGGAAGTAAGAGGAATGGAAGTCGTCCACCTCACTTCTGCAAAAGCA
GTGGTGCTATTGCTCGCCACATTCTTCAACAGTTGC
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