CK739974

Overview
NameCK739974
Unique NameCK739974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  149 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            RA +AEF++TLLF++  V + I + K +   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL +  ++++I  V
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGV 102          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  122 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK---KQSDACGGV-GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            +E K   F+RA++AEF+A +LF+++S+ + +G     K +   G V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+
Sbjct:    3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAI 97          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  122 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK---KQSDACGGV-GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            +E K   F+RA++AEF+A +LF+++S+ + +G     K +   G V   + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RA+
Sbjct:    3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAI 97          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  122 AELKLWSFYRALIAEFVATLLFLYVSVATVIGH----KKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            +E K   F+RA++AEF+A +LF+++S+ + +G     +    A      + ++ AFG  I  L      ISG H+NPAVT GL L+ ++S++RAV
Sbjct:    3 SEFKKKLFWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAV 97          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  149 RALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            +A +AEF+ATLLF++  V + I + +  +  A    GL+ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  +
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGI 102          
The following BLAST results are available for this feature:
BLAST of CK739974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TIP21_ARATH1.517e-1144.05Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQP1_SHEEP2.587e-1137.89Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN3.379e-1137.89Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_CANFA5.764e-1136.84Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
TIP23_MAIZE9.832e-1140.48Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6796 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739974 ID=CK739974; Name=CK739974; organism=Citrus sinensis; type=EST; length=409bp
AGAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAG
AAGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCA
CCAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAG
AGCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTG
TTGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTT
GGCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGT
TTACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGT
TTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTTA
CATGGTGGC
back to top