CK739979

Overview
NameCK739979
Unique NameCK739979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739979_ssr211 microsatellite CK739979_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7604 contig Csv1_Contig7604:76..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.439e-43
Identity = 79/139 (56.83%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F  ++  TW+  H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PI
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPI 171          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.716e-43
Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F  ++  TW+  H +Q  GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y+ILWN + IVF+VD++PI
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPI 172          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.269e-42
Identity = 80/139 (57.55%), Postives = 101/139 (72.66%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F  ++  TW+  H++   GG  IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF ++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVF VD++PI
Sbjct:   32 FGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPI 169          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F +DF VTWS  H+     GR+  L LDQ SG  F+S + +LFG++ MKIKL+ G S GTV A+YM+S+  N RDE+DFEFLGN  GQPY +QTN+YA G  +RE+R++LWFDPA D+H Y+ILWN H IVF VD +PI
Sbjct:   37 FNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPN-RDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPI 174          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.827e-42
Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  157 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            +F + F +TW        E G+ +   LD+ SG GF SK++YLFG++ MKIKLVPG+SAGTVTA+Y++S  E   DE+DFEFLGN TGQPY + TN++  GKG+RE +  LWFDP AD+H YT+LWN  +I+F VD +PI
Sbjct:   26 SFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETW-DEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPI 164          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.225e-42
Identity = 75/141 (53.19%), Postives = 103/141 (73.05%), Query Frame = 1
Query:  154 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            + F ++F +TW D   +   GG  + L LDQ SG GF SK++YLFGR+ M++KLV G+SAGTVTA+Y++S      DE+DFEFLGN TG+PY + TN++A GKGDREQ+  LWFDP  ++H Y+I+W   HI+F VD++PI
Sbjct:   26 SNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGAT-HDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPI 165          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.074e-41
Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F E F +TW +      E G+ +   LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S      DE+DFEFLGNRTG PYT+ TN++  GKGDRE +  LWFDP AD+H YT+ WN  +I+F VD +PI
Sbjct:   30 FYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKG-TAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPI 167          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.125e-41
Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = 1
Query:  157 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            +F ++F +TW +     +E G+ +   LD+ SG GF SK++YLFG++ MK+KLV G+SAGTVTA+Y++S  E   DE+DFEFLGN TGQPY + TN++  GKG+RE +  LWFDP AD+H YT+LWN  +I+F VD +PI
Sbjct:   25 SFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETW-DEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPI 163          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.082e-41
Identity = 79/139 (56.83%), Postives = 97/139 (69.78%), Query Frame = 1
Query:  160 FLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            F +D  +TW D     +  G  + L LDQ+SG GF SK +YL+G+V M+IKLVPG+SAGTVT FY+ S      DE+DFEFLGN +G PY V TN+Y  GKGDREQ+  LWFDP A +H Y+ILWN  HIVFY+D  PI
Sbjct:   28 FNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTW-DEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPI 165          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.331e-41
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  154 ATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            A F  D ++TW D   +    G  + L LD++SG GF SK +YLFG+VSM++KLVPG+SAGTVT  Y+ S      DE+DFEFLGN +G+PYT+ TN+Y  GKGD+EQ+  LWFDP A++H YTILWN   I+F VD  PI
Sbjct:   21 ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS-PGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPI 160          
The following BLAST results are available for this feature:
BLAST of CK739979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH_BRAOB7.439e-4356.83Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH9.716e-4357.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN1.269e-4257.55Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH2.164e-4257.55Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH2.827e-4254.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH8.225e-4253.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.074e-4153.96Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH13_ARATH3.125e-4152.86Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH4.082e-4156.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH5.331e-4154.61Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6801 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739979 ID=CK739979; Name=CK739979; organism=Citrus sinensis; type=EST; length=576bp
ACAACATATAATTAAAGATCTCTTTCTAATTAGTAACAGATAATATTTTA
TTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCAATAGCAT
TATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTTAGGGCGA
CCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATGCCCATCT
CAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGACCAAAATT
CAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGC
ATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATT
TTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGT
TCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTAT
GCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCC
TGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTG
TCTTCTATGTGGATGATGTGCCCATC
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