CK739979

Overview
NameCK739979
Unique NameCK739979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739979_ssr211 microsatellite CK739979_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7604 contig Csv1_Contig7604:76..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.079e-25
Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  157 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PI
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPI 159          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.409e-25
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1
Query:  193 AHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPI 576
            AH  Q+ G  A +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+
Sbjct:   53 AHNIQVNGSLA-KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPV 183          
BLAST of CK739979 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  163 LEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVD 564
            LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVD 275          
The following BLAST results are available for this feature:
BLAST of CK739979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH11_ARATH1.079e-2543.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.409e-2544.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST2.334e-1236.03Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6801 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739979 ID=CK739979; Name=CK739979; organism=Citrus sinensis; type=EST; length=576bp
ACAACATATAATTAAAGATCTCTTTCTAATTAGTAACAGATAATATTTTA
TTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATGCAATAGCAT
TATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTTAGGGCGA
CCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGATGCCCATCT
CAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGACCAAAATT
CAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGC
ATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATT
TTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGT
TCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTAT
GCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCC
TGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCACCATATTG
TCTTCTATGTGGATGATGTGCCCATC
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