CK739983 | Citrus Genome Database

Overview


Name	CK739983
Unique Name	CK739983
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	508

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_PIG (60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_MOUSE (60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_MACFA (60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_HUMAN (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_CHICK (60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_CERNI (60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.315e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 8.315e-27
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.834e-26
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EE++KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.4906 bits (62), Expect = 1.834e-26
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP K V++L GRY+GR
Sbjct:    4 FMKPGKVVLVLAGRYSGR 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.512e-25
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK  D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK  EER +  KN+WFF+KLRF
Sbjct:   25 IVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

HSP 2 Score: 23.8682 bits (50), Expect = 1.512e-25
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            FLK  K  +++ GRYAG+
Sbjct:    4 FLKAGKVAVVVRGRYAGK 21

BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.338e-25
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 2

Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK  D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYTLDV+  K VV+ ++ +   ++  A K  KK  EER +  KN+WFF+KLRF
Sbjct:   25 IVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

HSP 2 Score: 23.8682 bits (50), Expect = 4.338e-25
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3

Query:   84 FLKPNKTVILL*GRYAGR 137
            FLK  K  +++ GRYAG+
Sbjct:    4 FLKAGKVAVVVRGRYAGK 21

The following BLAST results are available for this feature:

BLAST of CK739983 vs. ExPASy Swiss-Prot

BLAST of CK739983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RL27_PIG	8.315e-27	51.79	60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 P...	[more]
RL27_MOUSE	8.315e-27	51.79	60S ribosomal protein L27 OS=Mus musculus GN=Rpl27...	[more]
RL27_MACFA	8.315e-27	51.79	60S ribosomal protein L27 OS=Macaca fascicularis G...	[more]
RL27_HUMAN	8.315e-27	51.79	60S ribosomal protein L27 OS=Homo sapiens GN=RPL27...	[more]
RL27_CHICK	8.315e-27	51.79	60S ribosomal protein L27 OS=Gallus gallus GN=RPL2...	[more]
RL27_CERNI	8.315e-27	51.79	60S ribosomal protein L27 OS=Cervus nippon GN=RPL2...	[more]
RL27_BOVIN	8.315e-27	51.79	60S ribosomal protein L27 OS=Bos taurus GN=RPL27 P...	[more]
RL27_CANFA	1.834e-26	50.89	60S ribosomal protein L27 OS=Canis familiaris GN=R...	[more]
RL27B_YEAST	1.512e-25	49.11	60S ribosomal protein L27-B OS=Saccharomyces cerev...	[more]
RL27A_YEAST	4.338e-25	49.11	60S ribosomal protein L27-A OS=Saccharomyces cerev...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6477 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739983 ID=CK739983; Name=CK739983; organism=Citrus sinensis; type=EST; length=508bp
CACGTTGCCAGCCTCTGCACAAACACACAAAAACCCAGAGAGAGTCGCGG
GCGCGCGAGGAGTGAGAGTTGAAATGGTGACCGTTTCTGAAACCAAATAA
GACCGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGTT
CGACGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGGA
TAAAGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGACA
GCGAAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGCA
CCTGATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGTAGTCGTGA
CGGCTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGAG
ACCAAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGTT
CTTTACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTT
GTCGTTTT