CK739983

Overview
NameCK739983
Unique NameCK739983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.333e-23
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 2
Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            IVK  D+ T+  P  H +VAGI++ P KV  K  AKK  K ++VK FVKLV+Y HLMPTRY+LDV+  K  VT+++L+   ++  A K  KK  EE+ +  KN+WFF KL F
Sbjct:   25 IVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          

HSP 2 Score: 23.483 bits (49), Expect = 1.333e-23
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:   84 FLKPNKTVILL*GRYAGR 137
            F+K  K  I++ GRYAG+
Sbjct:    4 FIKSGKVAIVVRGRYAGK 21          
BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.422e-23
Identity = 50/112 (44.64%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            I+++ D  ++  P GH +VAG+++ P KV     AK+ A+ SRVK F+K+V+Y HLMPTRY L++D LK ++TAD+ +   ++  A K  KK  EE++++ K+ WFFT LRF
Sbjct:   25 ILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          

HSP 2 Score: 22.3274 bits (46), Expect = 8.422e-23
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3
Query:   87 LKPNKTVILL*GRYAGR 137
            LKP K  ++  GR+AG+
Sbjct:    5 LKPGKVALITRGRFAGK 21          
BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.855e-22
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 2
Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            +VK  D+   +R   H ++AGI + P KV      KK  K +++K F+K+VSY HL+PTRY++DV   K  +  ++L++  KK  A  E K + EER+KT KN+WFFTKLRF
Sbjct:   25 VVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          

HSP 2 Score: 26.1794 bits (56), Expect = 1.855e-22
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 3
Query:   87 LKPNKTVILL*GRYAGR 137
            +KP K V++L G+YAGR
Sbjct:    5 MKPGKVVLVLRGKYAGR 21          
BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.982e-21
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 2
Query:  137 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            I+++ D  ++  P GH +VAG+++ P KV     AK+ AK SRVK F+K+++Y HLMPTRY L++D LK +VT  +     ++  A K  K   EE+++T K+ WFFT LRF
Sbjct:   25 ILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          

HSP 2 Score: 21.9422 bits (45), Expect = 1.982e-21
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3
Query:   87 LKPNKTVILL*GRYAGR 137
            LKP K  ++  GR+AG+
Sbjct:    5 LKPGKVALVTRGRFAGK 21          
BLAST of CK739983 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.602e-21
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  137 IVKSFDDRT--RERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLD-------VDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 469
            ++K+FDD T  + RP GHCLVAGI K P  ++   S K   K + +++FVK+V+Y H+MPTRY  +         LK  VT +S Q   K+       KK  E + K  K++WFF+KLRF
Sbjct:   26 VIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          

HSP 2 Score: 28.8758 bits (63), Expect = 9.602e-21
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:   84 FLKPNKTVILL*GRYAGR 137
            F+KP + VILL G+YAGR
Sbjct:    5 FIKPGRLVILLNGKYAGR 22          
The following BLAST results are available for this feature:
BLAST of CK739983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CANAL1.333e-2349.1160S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27A_SCHPO8.422e-2344.6460S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CAEEL1.855e-2244.6460S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27B_SCHPO1.982e-2143.7560S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI9.602e-2141.6760S ribosomal protein L27 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6477 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739983 ID=CK739983; Name=CK739983; organism=Citrus sinensis; type=EST; length=508bp
CACGTTGCCAGCCTCTGCACAAACACACAAAAACCCAGAGAGAGTCGCGG
GCGCGCGAGGAGTGAGAGTTGAAATGGTGACCGTTTCTGAAACCAAATAA
GACCGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGTT
CGACGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGGA
TAAAGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGACA
GCGAAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGCA
CCTGATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGTAGTCGTGA
CGGCTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGAG
ACCAAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGTT
CTTTACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTT
GTCGTTTT
back to top