CK739986

Overview
NameCK739986
Unique NameCK739986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B2_RAT (Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 3
Query:   63 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            T P D RFP  NQTR+C+  ++++HRC+     +G+ +  C+ + + + SLCP  W+++WNEQ + GTFPG +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNEQIKQGTFPGKI 88          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B2_HUMAN (Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   63 TAPADFRFPTTNQTRHCFTRYIEFHRCLAAK---GEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            T P D RFP+ NQ R+C+  ++++HRCL  +   G+ +  CE + + Y SLCP  W+E WNEQ +NG F G +
Sbjct:   16 TPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNGIFAGKI 88          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B2_BOVIN (Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   63 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            T P D RFP  NQTR+C+  ++++HRC+     +G+ +  CE + + Y SLCP  W+++W EQ ++GTF G +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKEQIKDGTFAGKI 88          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: COX6B_DICDI (Probable cytochrome c oxidase subunit 6B OS=Dictyostelium discoideum GN=DDB_G0284693 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.875e-12
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   54 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFP 263
            +L+TAP + RFP  NQT+HC+  Y++++ C+     ++++C+ F     SLCP  WI +W+EQ+    FP
Sbjct:    5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWDEQKAADLFP 74          
The following BLAST results are available for this feature:
BLAST of CK739986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CX6B2_RAT4.036e-1541.10Cytochrome c oxidase subunit 6B2 OS=Rattus norvegi... [more]
CX6B2_HUMAN8.991e-1543.84Cytochrome c oxidase subunit 6B2 OS=Homo sapiens G... [more]
CX6B2_BOVIN2.003e-1441.10Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=... [more]
COX6B_DICDI1.875e-1238.57Probable cytochrome c oxidase subunit 6B OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739986 ID=CK739986; Name=CK739986; organism=Citrus sinensis; type=EST; length=470bp
CTCGCCTCTTTGTTTCTCTCTTGAACTGATCAAGCATGGCCGCCGACGAG
ATTGAACTCAAAACTGCTCCTGCTGATTTCCGGTTTCCAACAACAAATCA
AACCAGACATTGCTTCACCCGCTACATTGAGTTTCATAGGTGCTTGGCAG
CAAAGGGGGAAGAATCTAATGAATGTGAAAGATTTGCTAAATACTATCGT
TCTCTCTGCCCCGGTGACTGGATTGAGAAGTGGAACGAGCAGAGGGAAAA
TGGGACGTTCCCAGGTCCTCTTTAAACTTGCATCAGCACTCGGGTGGCTT
TTCTTTTGGATGAAACGTTCATATTGCTCTGTTTATTTGCTCCCTGATCA
TGTTTTTTCATTTAAGCCTGAAAACCAATAAGGCAACAGTTAAAGATTGT
TTTGAATGTTGATGCTTTAGTAGTTTAGTTATTGACTTATTGCGCATGGT
CAATAAGCAAAAGACCTTTG
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