CK739988

Overview
NameCK739988
Unique NameCK739988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 1.369e-14
Identity = 30/66 (45.45%), Postives = 37/66 (56.06%), Query Frame = 1
Query:   76 GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAA---KEWRDRR 264
            G VCISILHPP DDP   EL SERW P   V             PN  SPANV+A+   ++W++ +
Sbjct:   90 GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          

HSP 2 Score: 39.6614 bits (91), Expect = 1.369e-14
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 3
Query:    6 NYPNSPPTVKFTTEIWHPNVYPDGP-CLHI 92
            +YP SPP  +F T++WHPN+Y  G  C+ I
Sbjct:   67 DYPYSPPAFRFLTKMWHPNIYETGDVCISI 96          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.872e-14
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   70 RMGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 312
            R GR+CISILH  GD P   E  +E W PV TVE            PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   90 RDGRLCISILHQSGD-PMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          

HSP 2 Score: 36.5798 bits (83), Expect = 3.872e-14
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 3
Query:    6 NYPNSPPTVKFTTEIWHPNVYPDG 77
            ++P SPP  +FT  I+HPNVY DG
Sbjct:   69 DFPFSPPQFRFTPAIYHPNVYRDG 92          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 4.339e-12
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:    6 NYPNSPPTVKFTTEIWHPNVYPDG 77
            NYP  PP + FT+E+WHPN+YPDG
Sbjct:   59 NYPYEPPKLTFTSEMWHPNIYPDG 82          

HSP 2 Score: 44.2838 bits (103), Expect = 4.339e-12
Identity = 26/82 (31.71%), Postives = 39/82 (47.56%), Query Frame = 1
Query:   76 GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 306
            GR+CISILH    +  G       W P   +E            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   82 GRLCISILHTDNVEERGMT-----WSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.634e-12
Identity = 28/82 (34.15%), Postives = 40/82 (48.78%), Query Frame = 1
Query:   76 GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 306
            GRVCISILH    +  G       W PV  ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   82 GRVCISILHGDNAEEQGMT-----WSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          

HSP 2 Score: 43.8986 bits (102), Expect = 5.634e-12
Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 3
Query:    6 NYPNSPPTVKFTTEIWHPNVYPDG 77
            NYP  PP + FT+E+WHPN+Y DG
Sbjct:   59 NYPYEPPRLTFTSEMWHPNIYSDG 82          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 2.698e-11
Identity = 17/29 (58.62%), Postives = 23/29 (79.31%), Query Frame = 3
Query:    9 YPNSPPTVKFTTEIWHPNVYPDGP-CLHI 92
            YP +PP + FT+E+WHPN+YPDG  C+ I
Sbjct:   60 YPYAPPRLTFTSEMWHPNIYPDGKLCISI 88          

HSP 2 Score: 43.1282 bits (100), Expect = 2.698e-11
Identity = 25/82 (30.49%), Postives = 39/82 (47.56%), Query Frame = 1
Query:   76 GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 306
            G++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   82 GKLCISILHGDNAEEQGMT-----WSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 3.508e-11
Identity = 15/23 (65.22%), Postives = 20/23 (86.96%), Query Frame = 3
Query:    9 YPNSPPTVKFTTEIWHPNVYPDG 77
            YP +PP + FT+E+WHPN+YPDG
Sbjct:   60 YPYAPPKLTFTSEMWHPNIYPDG 82          

HSP 2 Score: 43.1282 bits (100), Expect = 3.508e-11
Identity = 25/82 (30.49%), Postives = 39/82 (47.56%), Query Frame = 1
Query:   76 GRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 306
            GR+CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   82 GRLCISILHGDNAEEQGMT-----WSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CK739988 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 7.669e-11
Identity = 26/82 (31.71%), Postives = 40/82 (48.78%), Query Frame = 1
Query:   76 GRVCISILHPPGD-DPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 318
            G++CISIL      D + +    ++W PV  +             PN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:  117 GKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          

HSP 2 Score: 40.4318 bits (93), Expect = 7.669e-11
Identity = 16/31 (51.61%), Postives = 24/31 (77.42%), Query Frame = 3
Query:    3 SNYPNSPPTVKFTTEIWHPNVYPDGP-CLHI 92
            S+YP  PPT+KF ++++HPN+Y DG  C+ I
Sbjct:   93 SSYPLRPPTLKFVSKMFHPNIYEDGKMCISI 123          
The following BLAST results are available for this feature:
BLAST of CK739988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UB2R1_HUMAN1.369e-1445.45Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC3_YEAST3.872e-1443.21Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFK54.339e-1266.67Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP45.634e-1234.15Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA2.698e-1158.62Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFB73.508e-1165.22Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
Y1A1_ENCCU7.669e-1131.71Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6482 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739988 ID=CK739988; Name=CK739988; organism=Citrus sinensis; type=EST; length=484bp
CATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACAACAGAGATT
TGGCATCCTAATGTCTATCCGGATGGGCCGTGTCTGCATATCAATCCTTC
ATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTGAGCGCTGG
ATGCCTGTTCATACTGTTGAAAGTATCGTTTTGAGTATCATATCAATGCT
TTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGCAAAAGAAT
GGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAGGCCGCTGTGTGAGA
AGATCACAAGAAATGTTGTAAACCAACTGCAGGCACTCTTTTTTTTCTCT
ACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTGGGGGGAAC
TGGGTTCTGTGGGTACTTGGTCTTGTGTAGACTGGCATTTTGAAGTTCTC
TCAACCATCTCTCTCGTTTTCTCTGCATGGTCAA
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