CK740001

Overview
NameCK740001
Unique NameCK740001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:1045..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 98/106 (92.45%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQ++N+QNKNSSYFVEWIPNNVKSSVCDIPP+GL MA+TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  326 EVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 431
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLSM+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  325 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  328 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  328 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.114e-54
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.067e-54
Identity = 98/106 (92.45%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL M+STFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.067e-54
Identity = 98/106 (92.45%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL +ASTFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 4.067e-54
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  325 EVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 5.312e-54
Identity = 97/106 (91.51%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GL M+STF+GNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of CK740001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
TBB7_MAIZE3.114e-5494.34Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB5_ARATH3.114e-5492.45Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_MAIZE3.114e-5495.28Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB2_SOLTU3.114e-5495.28Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU3.114e-5495.28Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB1_ANEPH3.114e-5496.23Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_EUPFO4.067e-5492.45Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_EUPCR4.067e-5492.45Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB4_ARATH4.067e-5494.34Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_EUPOC5.312e-5491.51Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6495 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740001 ID=CK740001; Name=CK740001; organism=Citrus sinensis; type=EST; length=456bp
GGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACT
TTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCAT
CCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGA
GAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGATGAAATGGAG
TTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTGAGTACCAGCA
GTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAAGATGAGGAAG
AGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATGCATATTTGTC
TGTGTCGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAAAATGATCTAT
GATGTG
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