CK740001

Overview
NameCK740001
Unique NameCK740001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
[Close]
BLAST of CK740001 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.019e-53
Identity = 96/106 (90.57%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:    2 EVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 319
            EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGL M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  325 EVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
The following BLAST results are available for this feature:
BLAST of CK740001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
TBB5_MACMU2.019e-5391.51Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ... [more]
TBB5_HUMAN2.019e-5391.51Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV... [more]
TBB5_CRIGR2.019e-5391.51Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB... [more]
TBB5_BOVIN2.019e-5391.51Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S... [more]
TBB4_XENLA2.019e-5390.57Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE... [more]
TBB3_CHICK2.019e-5390.57Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2_CHICK2.019e-5390.57Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2C_RAT2.019e-5390.57Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2C_MOUSE2.019e-5390.57Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE... [more]
TBB2C_HUMAN2.019e-5390.57Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6495 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740001 ID=CK740001; Name=CK740001; organism=Citrus sinensis; type=EST; length=456bp
GGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAACTCTTCCTACT
TTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACTCAACATCCAT
CCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGA
GAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGATGAAATGGAG
TTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTGAGTACCAGCA
GTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAAGATGAGGAAG
AGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATGCATATTTGTC
TGTGTCGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAAAATGATCTAT
GATGTG
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