CK740005

Overview
NameCK740005
Unique NameCK740005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQF DWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFADWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VA+IKTKRTIQFVDWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.598e-31
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.598e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.598e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.598e-31
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.598e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.598e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.598e-31
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.598e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.598e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.598e-31
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.598e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.598e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.598e-31
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 2 Score: 75.485 bits (184), Expect = 2.598e-31
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.598e-31
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA2_MAIZE2.000e-3197.06Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE2.000e-3197.06Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_GOSHI2.000e-3197.06Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_ELEIN2.000e-3197.06Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA2_GOSHI2.000e-3197.06Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA6_MAIZE2.598e-3194.12Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE2.598e-3194.12Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN2.598e-3194.12Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ2.598e-3194.12Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU2.598e-3194.12Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6499 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bp
ATCATCCATGATGGCCAAATGTGACCCTCGTCATGGCAAGTATATGGCCT
GCTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCC
TGTGGCCACCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCC
CTACTGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTGGTCCCT
GGCCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCCT
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