CK740005

Overview
NameCK740005
Unique NameCK740005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 6.275e-15
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3
Query:   96 QPVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            Q +A++K K +   V+WCPTGFK GINYQ P  VPG
Sbjct:  332 QAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPG 367          

HSP 2 Score: 46.595 bits (109), Expect = 6.275e-15
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 2
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M  CDPR+GKYMA  L+YRGD VP+D   A
Sbjct:  301 NNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQA 333          
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.323e-15
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 2
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAHNSV 136
            +++MAKC P  GKYMACCLMYRG++VPK+   A  + +++   +V
Sbjct:  208 NNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTV 252          

HSP 2 Score: 45.4394 bits (106), Expect = 6.323e-15
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3
Query:  123 RTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +T+ FVDW PTGFKCGIN   PT V G
Sbjct:  250 KTVSFVDWSPTGFKCGINNSKPTTVLG 276          
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 8.153e-15
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 2
Query:    5 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAH 127
            +MMAKC+PR GKY+A CLMYRGDVV K+V  A  + + +A+
Sbjct:  298 NMMAKCNPRDGKYIASCLMYRGDVVNKEVTDAVKNVKSKAN 338          

HSP 2 Score: 46.2098 bits (108), Expect = 8.153e-15
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 200
            V  +K+K  IQFVDW P  FK G+N Q PTV+P
Sbjct:  330 VKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLP 362          
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.018e-14
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 2
Query:    5 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAHNSV 136
            ++MAKC P  GKYMACCLMYRGD+VPK+   A  + + +   +V
Sbjct:  307 NIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNV 350          

HSP 2 Score: 41.9726 bits (97), Expect = 3.018e-14
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  123 RTIQFVDWCPTGFKCGINYQPP 188
            R + FVDW PTGFKCGIN Q P
Sbjct:  348 RNVSFVDWSPTGFKCGINNQAP 369          
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.447e-13
Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            V+ IK + T+ FV WCP  FKCGIN QP T VPG
Sbjct:  338 VSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPG 371          

HSP 2 Score: 43.1282 bits (100), Expect = 2.447e-13
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 2
Query:    2 SSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAA 100
            +S+M +CD    GK+M+CC+MYRGDV  ++VN A
Sbjct:  304 NSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLA 337          
The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA2_EMENI6.275e-1558.33Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_DICPU6.323e-1548.89Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA6_NAEGR8.153e-1558.54Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA_DICDI3.018e-1452.27Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA1_ENTHI2.447e-1361.76Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6499 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bp
ATCATCCATGATGGCCAAATGTGACCCTCGTCATGGCAAGTATATGGCCT
GCTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCC
TGTGGCCACCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCC
CTACTGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTGGTCCCT
GGCCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCCT
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