CK740005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 6.275e-15 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3 Query: 96 QPVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 Q +A++K K + V+WCPTGFK GINYQ P VPG Sbjct: 332 QAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPG 367 HSP 2 Score: 46.595 bits (109), Expect = 6.275e-15 Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 ++ M CDPR+GKYMA L+YRGD VP+D A Sbjct: 301 NNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQA 333
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 6.323e-15 Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAHNSV 136 +++MAKC P GKYMACCLMYRG++VPK+ A + +++ +V Sbjct: 208 NNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTV 252 HSP 2 Score: 45.4394 bits (106), Expect = 6.323e-15 Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 Query: 123 RTIQFVDWCPTGFKCGINYQPPTVVPG 203 +T+ FVDW PTGFKCGIN PT V G Sbjct: 250 KTVSFVDWSPTGFKCGINNSKPTTVLG 276
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 8.153e-15 Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 2 Query: 5 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAH 127 +MMAKC+PR GKY+A CLMYRGDVV K+V A + + +A+ Sbjct: 298 NMMAKCNPRDGKYIASCLMYRGDVVNKEVTDAVKNVKSKAN 338 HSP 2 Score: 46.2098 bits (108), Expect = 8.153e-15 Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 200 V +K+K IQFVDW P FK G+N Q PTV+P Sbjct: 330 VKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLP 362
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.018e-14 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 2 Query: 5 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACGHHQDQAHNSV 136 ++MAKC P GKYMACCLMYRGD+VPK+ A + + + +V Sbjct: 307 NIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNV 350 HSP 2 Score: 41.9726 bits (97), Expect = 3.018e-14 Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3 Query: 123 RTIQFVDWCPTGFKCGINYQPP 188 R + FVDW PTGFKCGIN Q P Sbjct: 348 RNVSFVDWSPTGFKCGINNQAP 369
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 2.447e-13 Identity = 21/34 (61.76%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 V+ IK + T+ FV WCP FKCGIN QP T VPG Sbjct: 338 VSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPG 371 HSP 2 Score: 43.1282 bits (100), Expect = 2.447e-13 Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 2 SSMMAKCDP-RHGKYMACCLMYRGDVVPKDVNAA 100 +S+M +CD GK+M+CC+MYRGDV ++VN A Sbjct: 304 NSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLA 337 The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bpback to top |