CK740005

Overview
NameCK740005
Unique NameCK740005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-30
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 73.1738 bits (178), Expect = 1.246e-30
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 ANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 20.7866 bits (42), Expect = 1.246e-30
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKV RAV
Sbjct:  366 GDLAKVMRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-30
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 73.1738 bits (178), Expect = 1.246e-30
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 ANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 20.7866 bits (42), Expect = 1.246e-30
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKV RAV
Sbjct:  366 GDLAKVMRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.619e-30
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 2 Score: 75.485 bits (184), Expect = 1.619e-30
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VA IKTKRTIQFVDWCPTGFKCGINYQPP+VVPG
Sbjct:  332 VAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365

HSP 3 Score: 21.557 bits (44), Expect = 1.619e-30
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRA+
Sbjct:  366 GDLAKVQRAL 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.102e-30
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDW PTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 74.3294 bits (181), Expect = 2.102e-30
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.102e-30
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.102e-30
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDW PTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 74.3294 bits (181), Expect = 2.102e-30
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.102e-30
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.102e-30
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 200
            VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP
Sbjct:  331 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 363

HSP 2 Score: 74.3294 bits (181), Expect = 2.102e-30
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  298 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 330

HSP 3 Score: 21.1718 bits (43), Expect = 2.102e-30
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  202 AGDLAKVQRAV 234
            +GDLAKV RAV
Sbjct:  364 SGDLAKVMRAV 374
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.351e-30
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGR*PCQ 218
            VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP   P +
Sbjct:  327 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAK 365

HSP 2 Score: 74.3294 bits (181), Expect = 2.351e-30
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  294 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 326
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.730e-30
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VA IKTKRTIQFVDWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 72.0182 bits (175), Expect = 2.730e-30
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++MMAKCDPRHGKYMACCLMYRGDVVPKDVNA+
Sbjct:  299 ANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAS 331

HSP 3 Score: 22.7126 bits (47), Expect = 2.730e-30
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.546e-30
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            V +IKTKRT+QFVDWCPTGFKCGINYQPPTVVPG
Sbjct:  332 VHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 73.9442 bits (180), Expect = 3.546e-30
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            SS+MAKCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 SSVMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 3.546e-30
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.977e-30
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            VATIKTKRTIQFVDW PTGFKCGINYQPPTVVPG
Sbjct:  332 VATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPG 365

HSP 2 Score: 72.7886 bits (177), Expect = 5.977e-30
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            +SMM KCDPRHGKYMACCLMYRGDVVPKDVNAA
Sbjct:  299 ASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 5.977e-30
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA_PLAYO1.246e-30100.00Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK1.246e-30100.00Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBAE_PHYPO1.619e-30100.00Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA1_NAEGR2.102e-3097.06Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR2.102e-3097.06Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA2_STYLE2.102e-30100.00Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_STYLE2.351e-3087.18Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBAD_PHYPO2.730e-3097.06Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA2_ELEIN3.546e-3091.18Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA_TRYCR5.977e-3097.06Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6499 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bp
ATCATCCATGATGGCCAAATGTGACCCTCGTCATGGCAAGTATATGGCCT
GCTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCC
TGTGGCCACCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCC
CTACTGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTGGTCCCT
GGCCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCCT
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