CK740005

Overview
NameCK740005
Unique NameCK740005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1A_RAT (Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
[Close]
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.372e-28
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203
            +ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPG
Sbjct:  332 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG 365

HSP 2 Score: 68.5514 bits (166), Expect = 1.372e-28
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:    2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100
            ++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA
Sbjct:  299 ANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 331

HSP 3 Score: 22.7126 bits (47), Expect = 1.372e-28
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  205 GDLAKVQRAV 234
            GDLAKVQRAV
Sbjct:  366 GDLAKVQRAV 375
The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA1D_BOVIN1.372e-2894.12Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA1A_RAT1.372e-2894.12Tubulin alpha-1A chain OS=Rattus norvegicus GN=Tub... [more]
TBA1A_PANTR1.372e-2894.12Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1A_MOUSE1.372e-2894.12Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P... [more]
TBA1A_HUMAN1.372e-2894.12Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR1.372e-2894.12Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA1C_MOUSE1.372e-2894.12Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_HUMAN1.372e-2894.12Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1C_CRIGR1.372e-2894.12Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]
TBA1C_BOVIN1.372e-2894.12Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6499 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bp
ATCATCCATGATGGCCAAATGTGACCCTCGTCATGGCAAGTATATGGCCT
GCTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCC
TGTGGCCACCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCC
CTACTGGATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTGGTCCCT
GGCCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCCT
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