CK740009

Overview
NameCK740009
Unique NameCK740009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   66 TCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            TC  ++I+  YFQLCSE+Y WWWRS++T G                K+  + L + +LYFGY L+ S   F L G++GF+  F F   IY+S+KID
Sbjct:  534 TCIMVSIITVYFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  498 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 3
Query:   78 ITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            IT+ L YFQL  ED++WWW S++  GS+                 +  L+    YF YMLI  + FF+L GT+GFY+   F + IY ++K D
Sbjct:  496 ITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 3
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W N+                 T + +TI++ Y+ LC E++ W WRS++  G                K ++  +++ +LY GY LI S    V+TG IGF++  +F R IYS++K++
Sbjct:  557 WFNKIFYMFGFLLFSFLLLTLTTSLVTILITYYSLCLENWLWQWRSFIIGGLGCSIYTFIHSILFT-KFKLGGVITVVLYLGYSLIISALCCVVTGAIGFFSSMFFIRKIYSAIKVE 672          
The following BLAST results are available for this feature:
BLAST of CK740009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YON8_SCHPO6.019e-1941.67Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
TM9S1_RAT1.175e-1439.13Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB1.175e-1439.13Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE1.175e-1439.13Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN1.175e-1439.13Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN1.175e-1439.13Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
PHG1B_DICDI4.464e-1438.04Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TMN2_YEAST3.537e-1129.06Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6503 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740009 ID=CK740009; Name=CK740009; organism=Citrus sinensis; type=EST; length=590bp
TCTGGCTGAACCAGTTCTATTACATCTTTGGTTTCCTCTTCTTGGTCTTC
GTCATTCTCATTGTCACCTGTGCCGAAATAACCATTGTGCTATGCTACTT
CCAGTTGTGCAGTGAGGACTACCAATGGTGGTGGAGGTCATATCTTACAT
CAGGCTCTTCTGCTCTGTACCTCTTCCTTTACGCAACATTCTACTTCTTC
ACAAAGCTTGAAATAACCAAGCTGGTTTCTGGAATACTCTACTTTGGTTA
CATGCTGATTGCTTCATATGCATTTTTTGTACTAACGGGCACCATTGGAT
TTTATGCATGCTTTTGGTTCACAAGGCTGATTTACTCATCGGTGAAGATC
GATTAATTGATGAAACTGGAGAACGGGCATATTTCGATCGTCTGAAACAG
ATTATCTCAGGGTAAGGTTCAGTTCAGGAGTATGATATAATTATGCCTTT
CAGATGTGAACTTTCATGCTCATTTTTGTATGGAGACAAGGTTATTATCC
TGTTTTTTACACAATATTTTATTCTTAATTTTTCGTCGTACACCACCGTT
CTGTTATAGGATGTCCCTATCAGTGAGTTTGGGACTTTTA
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