CK740021

Overview
NameCK740021
Unique NameCK740021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740021 vs. ExPASy Swiss-Prot
Match: MVP_CHICK (Major vault protein OS=Gallus gallus GN=MVP PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.316e-67
Identity = 123/191 (64.40%), Postives = 156/191 (81.68%), Query Frame = 3
Query:    6 KKSRVVFGPELIMLGPDEHFSVLSLSGEKPKRPHVIKALALNLGPDFMTDIVIVETADHARLSLKLSYNWHFEMDKSNVEDAGKLFQVPDFVGDACKHVASRVRGAVAAISFDNFHRNSAKVIRAAVFGVDENEKIRNKFHFSANNLVITNIDIQSVEPVDQRTRDSLQKSVQLAIEITTKSQEATARHES 578
            +++RVV GPEL++LGP E  +VLSLSG +PKRPH  ++L L LGPDF  DIV +ETADHARL L+L+YNWHFE+ + + +  G+LF VPDFVGDACK +ASRVRGAVAA++FD+FH+NS ++I +AVFG DE  ++R    F  N LV+T++DIQSVEPVDQRTRD+LQ+SVQLAIEI T SQEA ARHE+
Sbjct:  477 RRARVVLGPELVVLGPGEQLTVLSLSGGRPKRPHARRSLCLRLGPDFCADIVTIETADHARLQLQLAYNWHFEVPE-DPKALGRLFSVPDFVGDACKALASRVRGAVAAVTFDDFHKNSNRLICSAVFGFDEGGRLREHLRFVPNGLVVTSVDIQSVEPVDQRTRDALQRSVQLAIEIATNSQEAAARHEA 666          
BLAST of CK740021 vs. ExPASy Swiss-Prot
Match: MVPB_DICDI (Major vault protein beta OS=Dictyostelium discoideum GN=mvpB PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.915e-65
Identity = 127/191 (66.49%), Postives = 152/191 (79.58%), Query Frame = 3
Query:    6 KKSRVVFGPELIMLGPDEHFSVLSLSGEKPKRPHVIKALALNLGPDFMTDIVIVETADHARLSLKLSYNWHFEMDKSNVEDAGKLFQVPDFVGDACKHVASRVRGAVAAISFDNFHRNSAKVIRAAVFGVDENEKIRNKFHFSANNLVITNIDIQSVEPVDQRTRDSLQKSVQLAIEITTKSQEATARHES 578
            K++RVVFGPEL+ML PDE F+VLSLSG+ PKRP+ I++LAL LGPDFMTD++ VETADHARLSLKLSYNWHF++++ N     KLF   DF GD CK   S VR AVAA +FDNFH++S+ +I+ AVFG  +     +  +F  N LVITNID+QSVEPVDQRT DSLQKSVQLAIEITTKSQEATAR E+
Sbjct:  477 KEARVVFGPELVMLEPDEEFTVLSLSGKIPKRPNHIRSLALFLGPDFMTDLITVETADHARLSLKLSYNWHFKVEQDN---PSKLFATSDFTGDLCKATGSLVRAAVAASTFDNFHKHSSDIIQQAVFGSTDGSS-NDCLYFETNGLVITNIDVQSVEPVDQRTLDSLQKSVQLAIEITTKSQEATARQEA 663          
The following BLAST results are available for this feature:
BLAST of CK740021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MVP_CHICK3.316e-6764.40Major vault protein OS=Gallus gallus GN=MVP PE=2 S... [more]
MVPB_DICDI6.915e-6566.49Major vault protein beta OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6515 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740021 ID=CK740021; Name=CK740021; organism=Citrus sinensis; type=EST; length=579bp
GAAACAAGAAGTCAAGAGTTGTCTTTGGACCCGAATTGATTATGTTGGGA
CCTGATGAGCACTTCTCTGTTCTCAGTTTATCTGGAGAGAAGCCAAAGAG
ACCTCATGTTATTAAGGCTCTTGCTCTTAACTTGGGACCTGACTTCATGA
CTGATATCGTCATTGTTGAAACTGCTGATCACGCAAGACTTTCTCTTAAG
TTATCATACAACTGGCACTTTGAAATGGATAAATCCAATGTTGAAGATGC
TGGAAAATTATTCCAAGTTCCTGACTTTGTTGGAGATGCTTGCAAACACG
TTGCATCTAGAGTTCGTGGAGCCGTTGCTGCCATTAGCTTTGACAACTTC
CACAGAAATTCTGCCAAAGTCATTCGAGCTGCTGTTTTTGGAGTCGATGA
AAATGAGAAAATTAGAAACAAATTCCACTTTAGTGCAAATAACTTGGTTA
TCACCAACATCGATATTCAATCTGTTGAGCCTGTAGATCAAAGAACCAGA
GACAGTCTTCAAAAATCAGTTCAACTTGCAATTGAAATCACAACCAAATC
TCAAGAAGCCACTGCTCGTCACGAGAGTG
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