CK740033

Overview
NameCK740033
Unique NameCK740033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.047e-69
Identity = 121/145 (83.45%), Postives = 135/145 (93.10%), Query Frame = 1
Query:    4 GRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+LMG VEGYR+
Sbjct:   31 GRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRV 175          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 1.786e-69
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 1
Query:    4 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRI 174          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 1.786e-69
Identity = 123/145 (84.83%), Postives = 132/145 (91.03%), Query Frame = 1
Query:    7 RITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:   22 KFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 166          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 3.046e-69
Identity = 121/148 (81.76%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    4 GRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct:   31 GKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 3.979e-69
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    4 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct:   30 GKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 8.863e-69
Identity = 121/148 (81.76%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    4 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G+  MR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+
Sbjct:   31 GKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRV 178          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.158e-68
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    4 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct:   31 GKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 1.512e-68
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1
Query:    4 GRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G++TMR+T   A      S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+
Sbjct:   31 GKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.579e-68
Identity = 121/149 (81.21%), Postives = 134/149 (89.93%), Query Frame = 1
Query:    1 GGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI
Sbjct:   31 GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 179          
BLAST of CK740033 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.579e-68
Identity = 120/147 (81.63%), Postives = 134/147 (91.16%), Query Frame = 1
Query:    4 GRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 435
            GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+
Sbjct:   31 GRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
The following BLAST results are available for this feature:
BLAST of CK740033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB23_APIGR1.047e-6983.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOYBN1.786e-6984.93Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_CUCSA1.786e-6984.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP3.046e-6981.76Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB24_PETSP3.979e-6982.43Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB27_TOBAC8.863e-6981.76Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP1.158e-6882.43Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_NICPL1.512e-6880.41Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB28_PEA2.579e-6881.21Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH2.579e-6881.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6527 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740033 ID=CK740033; Name=CK740033; organism=Citrus sinensis; type=EST; length=440bp
GGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCAT
CTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAA
CACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACC
GCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGA
GGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCC
CTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTC
AAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAA
CCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGG
TTGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGG
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