CK740038

Overview
NameCK740038
Unique NameCK740038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPN 142
            NVQ+E++ +KD S FTF  GWAFPRR+YF+G  CVMPPPD YP LPN
Sbjct:  366 NVQTEMILKKDKSDFTFSGGWAFPRRVYFDGHECVMPPPDQYPLLPN 412          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQ+ELL +KD   FTF +GWAFPRRI FNGD CVMP PD +P LP ++
Sbjct:  378 NVQTELLLKKDMGNFTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSA 426          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 2
Query:    2 NVQSELLFRKD---ASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYP 130
            NVQ EL+ RKD   +ST    KG AFP R+YFNGDNCVMPPPDAYP
Sbjct:  375 NVQGELIVRKDFRASSTTNNNKGRAFPVRVYFNGDNCVMPPPDAYP 420          
The following BLAST results are available for this feature:
BLAST of CK740038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBL7_ORYSJ6.501e-1568.09COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]
COBL6_ARATH7.188e-1465.31COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL4_ORYSJ3.339e-1169.57COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6532 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740038 ID=CK740038; Name=CK740038; organism=Citrus sinensis; type=EST; length=312bp
GAACGTGCAGTCAGAGCTGCTGTTTCGAAAAGATGCATCAACATTTACTT
TTGAGAAGGGTTGGGCTTTCCCTAGAAGGATTTATTTTAATGGAGATAAC
TGTGTGATGCCACCTCCAGATGCCTACCCGTGGTTGCCAAACGCAAGTTC
CCGGCCTGTTATTTCTCTGCTTCGTTCAGCCATAATAATCTTGGCATCTT
GGGTATTCTTATTGGCTTATGCGTGATGAATTATATCTGAGGCCAAAAGG
CTAACTTCTAGAACGTTCTTGACGTGCTATCTGGTCTGATATGTGCTGAA
GCATATGTAATC
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