CK740044

Overview
NameCK740044
Unique NameCK740044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3336 contig Csv1_Contig3336:567..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.325e-35
Identity = 71/106 (66.98%), Postives = 78/106 (73.58%), Query Frame = 2
Query:   20 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIK 337
            RLIGPNCPG+I PGECKIGIMPG+IH PG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D L+ F  DPQT               +AAA IK
Sbjct:  118 RLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIK 223          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.249e-34
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 2
Query:    8 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIK 337
            QSK+RL+GPNCPGII+PG+CKIGIMP +IHKPG +GIVSRSGTLTYEAV QTT   LGQS  +GIGGDPF GTNF+D L+ FL DP T               DAA  I+
Sbjct:  147 QSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIR 256          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 3.078e-33
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            KTRLIGPNCPG+I P ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q +  G+GQST VGIGGDP NGTNF+D L+ F  DP T
Sbjct:  116 KTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDT 201          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.169e-32
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 2
Query:   20 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            R+IGPNCPG+I PGECKIGIMPG+IH+ G+VGIVSRSGTLTYEAV QTT +G GQSTCVGIGGDP  GT+F+D LE F  D QT
Sbjct:  119 RMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTTQMGFGQSTCVGIGGDPIPGTSFIDVLEMFEKDSQT 202          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.995e-32
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IKE+
Sbjct:  116 KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.995e-32
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IKE+
Sbjct:  116 KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.804e-32
Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 2
Query:   23 LIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            +IGPNCPG+I P ECKIGIMP +IHK G+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G++F+D LE+F  DP+T               +AA  IK++
Sbjct:  119 MIGPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTTDEGFGQSTCVGIGGDPIPGSSFIDILERFQQDPETEAIVMIGEIGGSAEEEAAIFIKDN 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.900e-32
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIK 337
            KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK
Sbjct:  116 KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIK 223          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_STAAS (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=sucD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.900e-32
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIK 337
            KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK
Sbjct:  116 KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIK 223          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_STAAR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=sucD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.900e-32
Identity = 66/108 (61.11%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIK 337
            KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK
Sbjct:  116 KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIK 223          
The following BLAST results are available for this feature:
BLAST of CK740044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_PSEAE7.325e-3566.98Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO1.249e-3463.64Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_BACSU3.078e-3375.58Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_COXBU1.169e-3276.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES1.995e-3260.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ1.995e-3260.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_HAEIN5.804e-3260.75Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAW9.900e-3261.11Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAS9.900e-3261.11Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAR9.900e-3261.11Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740044 ID=CK740044; Name=CK740044; organism=Citrus sinensis; type=EST; length=348bp
AAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCA
TCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAA
CCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGC
AGTTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTA
TAGGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAG
TTCCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGG
TGGGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGAC
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