CK740044

Overview
NameCK740044
Unique NameCK740044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3336 contig Csv1_Contig3336:567..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.411e-24
Identity = 57/90 (63.33%), Postives = 63/90 (70.00%), Query Frame = 2
Query:    2 NRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T  G GQSTCVGIGGDP  G  FVD LE+F  DP T
Sbjct:  116 SRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGDPVTGLGFVDVLERFEDDPGT 204          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.923e-24
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            +++   LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T +GLGQST VGIGGD   GT+FV+ L  F  D +T
Sbjct:  113 KEAGATLIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKET 201          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.445e-22
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+     T  G+GQST VGIGGDP  G  FVD L+ F  D +T                AA  IK+
Sbjct:  116 REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGGDPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQ 227          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.020e-21
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T
Sbjct:  130 KTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFEKDPDT 213          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.863e-21
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 2
Query:   14 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T
Sbjct:  130 KTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFERDPDT 213          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   20 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            ++IGPN PGI  P   K+GI+P  + K G VG+VSRSGTLTYE   Q    G G STCVGIGGDP  G  + + L+ F  D +T
Sbjct:  123 KIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDET 206          
The following BLAST results are available for this feature:
BLAST of CK740044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_METTH3.411e-2463.33Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU9.923e-2459.55Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCD1_ARCFU5.445e-2245.54Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_MYCBO6.020e-2155.81Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCTU7.863e-2155.81Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_METJA1.063e-1752.38Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740044 ID=CK740044; Name=CK740044; organism=Citrus sinensis; type=EST; length=348bp
AAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCA
TCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAA
CCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGC
AGTTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTA
TAGGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAG
TTCCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGG
TGGGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGAC
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