CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+  R  K RR  R+++F+ID           G P + Y DF  +LP N+CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +++
Sbjct:   15 KVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRS 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.305e-35
Identity = 68/122 (55.74%), Postives = 88/122 (72.13%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+  R+ K RR  R+++F+ID           G P + Y DF  +LP ++CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +K+
Sbjct:   15 KVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKS 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.343e-35
Identity = 69/123 (56.10%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   79 NCK------GRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            NCK       +R  R++IF+ID           G P E+Y+DF A+LP ++CRYAV+DFD+ T+ENCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +K+
Sbjct:    3 NCKLKFLELKKRIFRFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKS 123          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.590e-35
Identity = 65/114 (57.02%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   85 KGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K ++  RYV++K++           G   ESY+D AA+LPE+DCRYAV+DFDYVT +NC+ SKIFFI WSP  SRIR KM+YATSK   RR LDG+HYE+QATDPTEM  ++++
Sbjct:   13 KWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQ 126          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+     K +R  R++IF+ID           G P E+Y+DF   LP N+CRYAVYDFD+ T+EN QKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+ +K+
Sbjct:   15 KLKFLELKAKRNYRFIIFRIDGQQVVVEKL--GSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKS 134          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 8.119e-34
Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+     K +R  R++I+KI+           G P +++ED AA+LP ++CRYA++DFD+V+SE   +S+IFF+AWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+  K+
Sbjct:   15 KLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKS 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.433e-31
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   91 RRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            R+  RYVIFKID          TG P ESY+DF A+LP +    AVYD D+V+ +NC+KSKIFFI+WSPS S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLE L+
Sbjct:   33 RKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLR 140          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.289e-30
Identity = 56/114 (49.12%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   85 KGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            + +R  R++ FK+D           G  A SY+DF  +LPENDCRYA+YDFD+VT+E+ QKS+IF+I WSPS++++++KMLYA+S  +F+  L+GI  E+QATD +E+ L+E+K
Sbjct:   22 QSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIK 135          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.903e-28
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K+     + +R  R++ F +D           G    SYEDF ++LPE DCR+A+YDFD++T+E+  KS+IF+I WSP  +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ LK
Sbjct:   15 KLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALK 135          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   73 SRNCKGR-------RFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-----------NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            S  CK R       R  R+V+FKID           G     +++  A+LP + CRYAVYD D+  S+              +SKIFF++WSP+ + +R+KM+YA+S + F++ELDG+  ++QATDP+E+ L+ LK
Sbjct:   11 SEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLK 146          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ADF1_MAIZE3.296e-3555.74Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF2_MAIZE4.305e-3555.74Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF_BRANA7.343e-3556.10Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF9_ARATH9.590e-3557.02Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF12_ARATH2.136e-3456.56Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF3_ARATH8.119e-3451.64Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF8_ORYSJ6.433e-3158.04Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_MAIZE9.289e-3049.12Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ3.903e-2844.63Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ2.450e-2238.24Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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