CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.035e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   85 KGRRFTRYVIFKIDXXXXXXXXXXT-----GGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K RR  R +++KI+                G   +SYE+FA +LP ++CRYA+ D ++V  E     KI FIAWSPST+++R KM+Y+++KDRF+RELDGI  E  ATD T++ L+ ++
Sbjct:   15 KERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIR 129          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.756e-20
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   88 GRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            G++ T ++I+KI+           G   +SY+ F   LPENDCRYAVYDF+Y ++S   ++SK+ F  WSP T+ +R+KM+YA+SKD  RR L GI  EIQ TD +E+  E +
Sbjct:   32 GKKVT-FIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESV 142          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 408
            RYV FK++           GGP  +YEDF + LPE DCRYA++D+++   +  Q++KI FI W+P ++ I++KM+Y ++KD  +++L GI  E+QATD  E+
Sbjct:   24 RYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEI 124          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   88 GRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            G++F + +I+K++          T    ++Y+ F   LPENDCRYAVYDF+Y   + + +++KI F  WSP T+ +RAKM+YA+SKD  RR L+GI  EIQ TD +E+  E +
Sbjct:   22 GKKF-KSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESV 132          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.471e-19
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            + Y+ F   LPENDC YAVYDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  +IQ TD +E+  E +
Sbjct:   48 QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESV 132          

HSP 2 Score: 24.2534 bits (51), Expect = 7.471e-19
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:   36 SGMGVADHSKNAFTELQRKK 95
            SG+ VAD S NAF +L+  K
Sbjct:    4 SGVAVADESLNAFNDLKLGK 23          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  169 AESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 417
            ++SY++F   LPENDC YA+YDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L G+  +IQ TD +E+  E
Sbjct:   47 SQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFE 130          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 417
            ++V+F ++          T     SY+ F   LPENDC YAVYDF+Y  SE+  ++SKI F  WSP T+ +R KM+YA+SKD  +R L+G+  EIQ TD +E+  E
Sbjct:   26 KFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYE 130          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.391e-17
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  175 SYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            SY+ F   LPENDC YA+YDF+Y +     ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  ++Q TD +E+  + +
Sbjct:   49 SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSV 132          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.373e-17
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 417
            +Y+I+ ++          T   + SY+DF A LP  +CRYA+YDF+Y   +  +++KI F +WSP  ++I+ KM++A+SKD  R+ L GI  EIQ TD +E+  +
Sbjct:   25 KYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYD 128          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17
Identity = 42/113 (37.17%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   88 GRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            G+++ +++IF ++          T   ++ Y+ F   LPEN+C+YA+YDF+Y +     ++SKI F  WSP T+ I++KM+YA+SKD  RR L+G+  ++Q TD +E+  E +
Sbjct:   22 GKKY-KFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESV 132          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ADF11_ARATH6.035e-2142.86Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_YARLI1.756e-2045.13Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
ACTP_ACACA5.109e-2042.16Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_PICAN5.648e-1943.36Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_KLULA7.471e-1949.41Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.643e-1850.00Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_CANGA1.643e-1844.34Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_YEAST1.391e-1746.43Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_USTMA2.373e-1739.05Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA3.099e-1737.17Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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