CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.048e-17
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   88 GRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            G+++ ++V+F ++          T    + Y+ F   LPE+DC YAVYDF+Y ++    ++SKI F  WSP T+ IR+KM+YA+SKD  RR L+G+  +IQ TD +E+  E +
Sbjct:   22 GKKY-KFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESV 132          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.009e-16
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 423
            + ++ F A LPE DCR+AVYDF++ +      ++K+ FI WSP  + ++ KM++A+SK+  RR LDGIH EIQATD +E+  + L
Sbjct:   47 KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDAL 131          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 417
            RYV+FK++               + ++ F   LPE DCRYA+YDF++   E   ++KI FI+WSP  + I++KM+Y++SKD  RR   GI  +IQATD +E+  E
Sbjct:   26 RYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYE 128          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.302e-15
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  175 SYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 408
            S+++F   LPEN+CRY V D+ Y   E  QKSKI F+AW P T+ I+ KM+  +SKD  R+   GI  EIQ TD +E+
Sbjct:   49 SFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.471e-14
Identity = 33/79 (41.77%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 408
            ES+ED+    P++DCRY VYDF Y+ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD TE+
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEI 125          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.715e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
COFI_ASHGO4.048e-1739.82Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COFI_CRYNE2.009e-1645.88Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COFI_SCHPO3.427e-1640.95Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COF1_DICDI1.302e-1548.72Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COF4_DICDI5.471e-1441.77Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_PIG2.715e-1337.50Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN2.715e-1337.50Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN2.715e-1337.50Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT3.546e-1337.50Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE3.546e-1337.50Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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