CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 411
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 4.631e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 390
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE---NDCRYAVYDFDYV-----TSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            RYVIF I               AE Y+ F   + +    +CRY ++DF+Y+     TSE+ +K K+F ++W P T++++ KMLY++S D  ++ L G+   IQATD +E   E ++
Sbjct:   25 RYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVE 139          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.121e-12
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DEST_CHICK3.546e-1337.50Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
COF1_RAT3.546e-1343.84Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN3.546e-1343.84Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF1_MOUSE4.631e-1343.84Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF1_SHEEP6.049e-1343.84Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG6.049e-1343.84Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA6.049e-1343.84Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN6.049e-1343.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
CADF_DROME2.299e-1234.48Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF1A_XENLA5.121e-1243.06Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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