CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 6.688e-12
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.141e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.946e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  172 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 387
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++   GI +E Q
Sbjct:   66 DPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  217 RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEE-LKTV 432
            RYAVYDF+Y + S +  ++KI FIAWSP  + I+ KM+YA+SK+  +R L GI  E+QA D  +++ +  LKTV
Sbjct:   65 RYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSILKTV 138          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
COF2_PIG6.688e-1243.06Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE6.688e-1243.06Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN6.688e-1243.06Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN6.688e-1243.06Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1B_XENLA6.688e-1243.06Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF2_CHICK1.141e-1143.06Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1_XENTR1.946e-1141.67Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]
COFI_GIBZE2.541e-1148.65Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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