CK740057

Overview
NameCK740057
Unique NameCK740057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  182 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.485e-43
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  179 PLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  180 PLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.144e-42
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  171 PLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.657e-42
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  179 PLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.657e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  143 PLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.147e-42
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  180 PLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CK740057 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.147e-42
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 2
Query:    2 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
            PLGE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  179 PLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of CK740057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB29_MAIZE1.137e-4394.19Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC1.485e-4395.35Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU1.485e-4396.51Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_MAIZE1.257e-4293.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN2.144e-4293.02Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR3.657e-4291.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA3.657e-4293.02Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_SINAL6.238e-4294.19Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU8.147e-4290.70Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_LEMGI8.147e-4291.86Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6551 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740057 ID=CK740057; Name=CK740057; organism=Citrus sinensis; type=EST; length=367bp
GCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATC
CATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAG
GAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGT
TCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACT
TGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTC
CCCGGAAAGTGAGCCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCT
TGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTT
GTGATTATTTATAAAAT
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