CK740059

Overview
NameCK740059
Unique NameCK740059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 47/128 (36.72%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   +  + PT+    E +   N  FT +D+GG  + R +W+ YF    G++F+VD+ D  R  E++ EL  +L  ++L+    L+  NK D+P A++  E+ D LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.688e-20
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    4 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 390
            ++MVGLD AGKT  +  ++    +   PT+GF+   ++      T++D+GG  +IR +W++Y+  + G++FVVDS+D  R+ E RD +  +L    +    +LV ANKQD   AM  A+I + L L  L
Sbjct:   24 LVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKL 152          

HSP 2 Score: 22.3274 bits (46), Expect = 2.688e-20
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 2
Query:  437 KGCMRDLDWLLNNIA 481
            K     L+WLLNNIA
Sbjct:  177 KSIKNGLNWLLNNIA 191          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL  +L+ + L     L+  NK D   A++  ++  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 8.227e-20
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 387
            ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ E++ EL  +   +EL     L+  NK D   A+   E+   LGL++
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTAIGEMELKSALGLYN 150          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.227e-20
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     LV  NK D P+A++  E+  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.227e-20
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 384
            ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLY 149          
BLAST of CK740059 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-19
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 387
            ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +   +EL     L+  NK D  +A+   E+   LGL++
Sbjct:   22 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN 150          
The following BLAST results are available for this feature:
BLAST of CK740059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_YARLI1.658e-2036.72Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_NEOFI2.165e-2038.28Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPFU2.165e-2038.28Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL2.165e-2038.28Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
AR13B_DANRE2.688e-2036.43ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
SAR1_CRYNE2.828e-2037.50Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_PICGU8.227e-2035.66Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1_EMENI8.227e-2038.28Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_ASPOR8.227e-2037.50Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_DEBHA1.075e-1935.66Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6553 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740059 ID=CK740059; Name=CK740059; organism=Citrus sinensis; type=EST; length=556bp
AGAATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTA
CAAGCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTA
ATGTAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTC
GGGGGTCAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACAC
CCAAGGACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTAG
AAGCTAGGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGAT
GCTGTGCTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAACGCAATGAA
TGCTGCTGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCC
ACTGGTATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAG
GGACCTTGACTGGCTCTTAAACAACATTGCAAACAAGGCATAGACAACTA
AATTTTGAGTTTTGGGTTGCCCGCAACCTGCTGAAATACAGAGTTTAACA
ACACCA
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