CK740064

Overview
NameCK740064
Unique NameCK740064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740064_ssr9 microsatellite CK740064_ssr9:9..18. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740064_ssr114 microsatellite CK740064_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:34..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740064 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:  244 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 540
            RS +A LQF V RV   LK+              Y AA+LE L AEVLE+A N ++  K   I PRH+ LA+R D E++ L  G TI+  GV+P   K L
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPV-YLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116
The following BLAST results are available for this feature:
BLAST of CK740064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A2_LILLO6.521e-1143.00Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6558 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740064 ID=CK740064; Name=CK740064; organism=Citrus sinensis; type=EST; length=702bp
GTCACTCGCTCTCTCTCTCACACACAAAAATCTCAAACGCTCGCTTAGCT
TTATCTCTTTCTTTCCTCTCCGATAATTTTCATCTCAGAAAAAATTAAAA
ATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTAGAAATTAGGC
GGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAGGCAAAACCAC
CATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTCTCCCGTTCTT
CTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCGTCTGCTAAAG
GAAAGGGCTGCTGCTCACGGAAGGGTTGGTGCAACAGCTGCTGTTTATAC
AGCAGCCATTTTGGAGTATCTAACTGCCGAAGTGTTGGAGTTGGCAGGGA
ATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAGGCATTTGCAG
CTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTAAAGGAACCAT
AGCCGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCTCATCAATAAAT
CCTCCAAAGAGTAGTTCGTGACACCATCATCCTCTCGGCTTTGTTTATGT
GTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAATGATGCCAGAGA
TGTGTAATGCTAGGAATCTGCATTCTTCAATCTTCATTTCATGCAGCGAC
GA
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